Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20cruzi_20[genbank_20GCA_5F002219105.1_202017- 07-14] 1,030 sequences; 50,993,492 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq764 194 2e-44 seq253 114 2e-20 >seq764 Length=631131 Score = 194 bits (214), Expect = 2e-44 Identities = 680/1054 (65%), Gaps = 17/1054 (2%) Strand=Plus/Minus Query 113602 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGACAACTT 113661 ||| ||||| |||||||| || || | | ||||||| | | ||||| || | || || Sbjct 147489 GTAATACATGCCCGTCTTTAGGCCACGTTCCCAGGCAAAAAAGTGCATGGATGTCAGCTG 147430 Query 113662 GGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 113721 | | |||||| |||||| || || |||| ||||| ||||| ||||| || Sbjct 147429 GCTGGAAGTTGGATTTTCCAAAAATAGATTCAAGCTTTGACTCTGATCAATGAACTTGCC 147370 Query 113722 ACGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAG 113781 ||| ||| | ||||| || || | ||||||| | || ||||||||| | || || Sbjct 147369 ACGGTCCACAGCCATCTCGATGAGATCCTTCTGCCGAATCTCCCACACAACACGATACAG 147310 Query 113782 GTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCCTTGACCAT 113841 | ||| | |||| ||| || || || ||||| | |||||| | | | || Sbjct 147309 CTCCTTGAGGTCATTTGGAATGCCCCTAATGTTTTGCACTGAGCCATTG---TAGGCAAT 147253 Query 113842 GAGATCCTT---CATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATG 113898 || | || ||| || | ||| ||||| ||| |||||||| ||| || | Sbjct 147252 GATCTGATTGCGCATCTCTTCGTTCCACAGACCCCGCTTAATGAGATCCATCACAAGGTA 147193 Query 113899 CTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTA 113958 ||| || || ||| ||||||||| || || | || |||||||| | || | Sbjct 147192 CTTGTTAACCACAGGAAACTCACCACTCAGCACTCGGCGCACGTAGATATTTGAGGTAAA 147133 Query 113959 TGGCTCAAAGCACTCATTGTTACCCAAG-ATTTGGGCGGTGGAGGCTGTGGGCATGGGTG 114017 ||||||||||||||||||||| |||||| || || | ||||| || |||||||| || | Sbjct 147132 TGGCTCAAAGCACTCATTGTT-CCCAAGTATCTGCGAAGTGGATGCAGTGGGCATTGGAG 147074 Query 114018 CCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTCCCAGT 114077 ||| || | || || | || ||| | | || || | ||| | || ||||| | Sbjct 147073 CCAAAAGTAACGAATTCCGCATGCCACTTTTCATCATACGCTTCTTCAATGCATCCCAAT 147014 Query 114078 CGTAGTTGAGCTTTGTC---TCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGAGG 114134 | | | || | | | || ||||| ||||||||| || ||||| || | Sbjct 147013 CCCAACGGCCACTTCGCGGTTTCTGCTCCCACAGATCAAACTGTAGCTGGCCTTGCGACG 146954 Query 114135 CTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCT 114194 | || || |||| | | || || ||||| || ||||| | ||| |||||||| Sbjct 146953 CGGGACTGCCTGCAAACCGCGCATAGGGCCCCTCCACTTCCGCGAGTTCCACGCTCGCCT 146894 Query 114195 CGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGG 114254 | | || ||| || || || |||||||| |||||| | | ||||| | | Sbjct 146893 CCACAGCACCGTAGTAAATCGTTTCAAAAATATCTTCATTCAAATTCCTCGCCTCCTGGC 146834 Query 114255 AATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAA 114314 | || | || || || ||||| ||||| | ||||| || || | |||| Sbjct 146833 ATGTGAATGGTAGCCGCATCAGGATAAAAGTGTCCGCCATTCCTTGCACGCCAATTCCAA 146774 Query 114315 TTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC---ACGGGATAAAAATTCCTAT 114371 | || |||| | || ||| | ||| ||| || |||||| || | || Sbjct 146773 TGGGACGATTGAGCTCGTTG--CTTCGGCGCGA-CTCGGGTACAGGATAATGGTTACGAT 146717 Query 114372 CGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAAT 114431 |||| || | ||| |||||||| ||||||| || |||| |||| ||| | || || Sbjct 146716 CGATCACTCGATTAAGATTTTTTGTGACAATTTTCGTGACCTCATACAGCCGCTGGTGAT 146657 Query 114432 CAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACA 114491 | || | |||||| || ||| | ||||| || || || || || || |||| Sbjct 146656 CGTAAATTTTTCTCTCTTTATCCACAAAGCGTGGAAGTGCAATGGAGGCAAGGTTGCACA 146597 Query 114492 CAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAA 114551 | | | |||||| | || ||||||||||| || || || | || || | ||| | Sbjct 146596 CCGCGACTTCATCCCTTGATGTATACTCTATAATCTCTGTGCAAAGGTTCGAGCACTTGA 146537 Query 114552 TGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATG 114611 || || | ||||| |||||||| || |||||| || ||||||||||||||| | | Sbjct 146536 TGACTCCAACATTCTTCTGATTTGATTTACGGTTACATGCGTCCTTGTAAAGCATGAAAG 146477 Query 114612 GCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGC 114645 | ||||| ||| | || || | ||| || || Sbjct 146476 GGACGCCCGTTTCCATCTGCGATTCGAGTATGGC 146443 >seq253 Length=51549 Score = 114 bits (126), Expect = 2e-20 Identities = 240/351 (68%), Gaps = 15/351 (4%) Strand=Plus/Plus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || ||| | || || ||||| |||||||||||||| ||| ||| || Sbjct 29978 GCAAAGTCCGTGTGCAAGCCTTCATCACGCGAGATGAGTTCATTACTGAACGTCAGCCCG 30037 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||| ||||| |||||||| | |||||| | |||||| || || || || ||||| || Sbjct 30038 GGCATCAGACCACGCTTCTTTAGCCAGAACAGCGCACAGAAGGAGCCGGAAAAGAAAATA 30097 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGC-GCGACTTTGTGTCAAA 126225 || ||||| ||| || |||| || || || ||||| || | || | || | Sbjct 30098 CCTTCCACCGCCGCAAAGGCAACAAGGCGTTCGGCAAACGAACTGC----TGCTGCGGAT 30153 Query 126226 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC-TTCA- 126283 |||| |||||||| | |||||||||| ||| ||||| | ||| || || | || Sbjct 30154 CCACCGAATCGCCCAGTTGGCCTTTTTCTGGATGCACGGAATTGTCGAAATGGCGTGCAA 30213 Query 126284 -AAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGT 126342 | | | ||||||| || | |||| |||||||| |||| | || || ||||| Sbjct 30214 CATGCGGTCCTTCTCCTC---CGTATCTGTGATGTACGTATCCAACAGCACCGAGTATGT 30270 Query 126343 TTCGCCGTGGACCATTTCATTATGGCA--CTGATACGCGTAGAAAGAGCGC 126391 ||| || || | ||| |||||| ||| || ||||||| ||||| Sbjct 30271 TTCCGAATGAACGTTCTCA--ATGGCAATCTGGAACCCGTAGAAGCAGCGC 30319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597345909072400