Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20cruzi_20[genbank_20GCA_5F002219105.1_202017- 07-14] 1,030 sequences; 50,993,492 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq764 185 1e-41 seq253 129 7e-25 >seq764 Length=631131 Score = 185 bits (204), Expect = 1e-41 Identities = 680/1054 (65%), Gaps = 17/1054 (2%) Strand=Plus/Minus Query 115563 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 115622 ||| ||||| |||||||| || || | | ||||||| | | ||||| || | || || Sbjct 147489 GTAATACATGCCCGTCTTTAGGCCACGTTCCCAGGCAAAAAAGTGCATGGATGTCAGCTG 147430 Query 115623 GGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 115682 | | |||||| |||||| || || |||| ||||| ||||| ||||| || Sbjct 147429 GCTGGAAGTTGGATTTTCCAAAAATAGATTCAAGCTTTGACTCTGATCAATGAACTTGCC 147370 Query 115683 CCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAG 115742 || ||| | ||||| || || | ||||||| | || ||||||||| | || || Sbjct 147369 ACGGTCCACAGCCATCTCGATGAGATCCTTCTGCCGAATCTCCCACACAACACGATACAG 147310 Query 115743 GTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCAT 115802 | ||| | |||| ||| || || || ||||| | |||||| || | | | || Sbjct 147309 CTCCTTGAGGTCATTTGGAATGCCCCTAATGTTTTGCACTGAGCCAT-TG--TAGGCAAT 147253 Query 115803 GAGATCCTT---CATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTG 115859 || | || ||| || | ||| ||||| ||| |||||||| ||| |||| Sbjct 147252 GATCTGATTGCGCATCTCTTCGTTCCACAGACCCCGCTTAATGAGATCCATCACAAGGTA 147193 Query 115860 CTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTA 115919 ||| || || ||| ||||||||| || || | || ||||| || | || | Sbjct 147192 CTTGTTAACCACAGGAAACTCACCACTCAGCACTCGGCGCACGTAGATATTTGAGGTAAA 147133 Query 115920 TGGCTCAAAGCACTCATTGTTACCCAAG-ATTTGGGCTGTGGAGGCTGTGGGCATGGGTG 115978 ||||||||||||||||||||| |||||| || || | ||||| || |||||||| || | Sbjct 147132 TGGCTCAAAGCACTCATTGTT-CCCAAGTATCTGCGAAGTGGATGCAGTGGGCATTGGAG 147074 Query 115979 CCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGT 116038 ||| || | || || | || | | || || | ||| | || ||||| | Sbjct 147073 CCAAAAGTAACGAATTCCGCATGCCACTTTTCATCATACGCTTCTTCAATGCATCCCAAT 147014 Query 116039 CGTAGTTG-AGCTT--TGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACG 116095 | | | ||| | | | |||||||| ||||||||| || ||||| |||| Sbjct 147013 CCCAACGGCCACTTCGCGGTTTCTGCTCCCACAGATCAAACTGTAGCTGGCCTTGCGACG 146954 Query 116096 CTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCT 116155 | || || |||| | |||| || ||||| || ||||| | ||| |||||||| Sbjct 146953 CGGGACTGCCTGCAAACCGCGCATAGGGCCCCTCCACTTCCGCGAGTTCCACGCTCGCCT 146894 Query 116156 CGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGG 116215 | | || ||| || || || |||||||| |||||| | | ||||| | | Sbjct 146893 CCACAGCACCGTAGTAAATCGTTTCAAAAATATCTTCATTCAAATTCCTCGCCTCCTGGC 146834 Query 116216 AATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAA 116275 | || | || || || ||||| ||||| | ||||| || || | |||| Sbjct 146833 ATGTGAATGGTAGCCGCATCAGGATAAAAGTGTCCGCCATTCCTTGCACGCCAATTCCAA 146774 Query 116276 TTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC---CACGGGATAAAAATTCCTAT 116332 | || |||| | || ||| | || | ||| || |||||| || | || Sbjct 146773 TGGGACGATTGAGCTCGTT--GCTTCGGCGC-GACTCGGGTACAGGATAATGGTTACGAT 146717 Query 116333 CGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAAT 116392 |||| || | ||| |||||||| ||||||| || |||| |||| ||| | || || Sbjct 146716 CGATCACTCGATTAAGATTTTTTGTGACAATTTTCGTGACCTCATACAGCCGCTGGTGAT 146657 Query 116393 CAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACA 116452 | || | |||||| || ||| | ||||| || || || || || || |||| Sbjct 146656 CGTAAATTTTTCTCTCTTTATCCACAAAGCGTGGAAGTGCAATGGAGGCAAGGTTGCACA 146597 Query 116453 CAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAA 116512 | | | |||||| | || ||||||||||| || || || | || || | ||| | Sbjct 146596 CCGCGACTTCATCCCTTGATGTATACTCTATAATCTCTGTGCAAAGGTTCGAGCACTTGA 146537 Query 116513 TGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATG 116572 || || | ||||| |||||||| || |||||| || |||||||| ||||| | | Sbjct 146536 TGACTCCAACATTCTTCTGATTTGATTTACGGTTACATGCGTCCTTGTAAAGCATGAAAG 146477 Query 116573 GCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGC 116606 | ||||| ||| | || || | ||| || || Sbjct 146476 GGACGCCCGTTTCCATCTGCGATTCGAGTATGGC 146443 >seq253 Length=51549 Score = 129 bits (142), Expect = 7e-25 Identities = 430/655 (66%), Gaps = 42/655 (6%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| || |||||| |||||| |||||||||||||| || | || ||| | ||||| Sbjct 29686 GTACTCACCGACCTTCTTCTCAAAGAAGTTTGTCTTTCCCTGCAGTGAGATCATTTCCAT 29745 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAA-----TTGTTGGCACCCCAATCTGTTTGAGG 127345 ||| || ||||||||||||||||| | | |||| |||| || Sbjct 29746 AAAGTCGAATGGGTTCTTTGAGTTGTAGTGACGCTCGTTG-----CCAAGTGCCACCAGC 29800 Query 127346 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGG 127405 || ||||||| || |||| |||||| |||||| || | |||||| || | || Sbjct 29801 AGCCGATCCGCCACAAACTCTATGTACGTCGACATCAAATCTGCGTTCATCCCCAGCAGC 29860 Query 127406 TT-ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGAT 127464 ||| |||| | ||| |||||||| | |||||||||||| || | | || Sbjct 29861 CGCACA-GGGATGGAGTCACAGATGAACTCACGCTCAATGTCCACCGCACTGCAAATAAT 29919 Query 127465 GGCGTGAATAGTGTCCACCCCAGGTCTATTG--CGTAA---AGTCTTG----AAGAGTTC 127515 || ||||| ||| ||| ||| | || ||| || || || Sbjct 29920 CTCGCGAATACGCTCCGTT---GGTAGCTTGTTCACAATGTAGTTTTCGTACAACAGG-- 29974 Query 127516 CACAGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAG 127575 ||| ||||| || ||| | || || ||||| |||||||||||||| ||| ||| Sbjct 29975 CAC-GCAAAGTCCGTGTGCAAGCCTTCATCACGCGAGATGAGTTCATTACTGAACGTCAG 30033 Query 127576 ACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAA 127635 || ||||| ||||| |||||||| | |||||| | |||||| || ||||| || ||||| Sbjct 30034 CCCGGGCATCAGACCACGCTTCTTTAGCCAGAACAGCGCACAGAAGGAGCCGGAAAAGAA 30093 Query 127636 GATCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGC-GGGACTTTGTAT 127694 || || ||||| ||| || |||| || || |||||||| || | | || | || Sbjct 30094 AATACCTTCCACCGCCGCAAAGGCAACAAGGCGTTCGGCAAACGAACTGCTGCTGCGGAT 30153 Query 127695 CAAACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC-T 127753 |||| |||||||| | |||||||||| ||| || || | ||| || || | Sbjct 30154 ----CCACCGAATCGCCCAGTTGGCCTTTTTCTGGATGCACGGAATTGTCGAAATGGCGT 30209 Query 127754 TCA--AAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAAT 127811 || | | | ||||||| || | |||| |||||||| |||| | || || | Sbjct 30210 GCAACATGCGGTCCTTCTCCTC---CGTATCTGTGATGTACGTATCCAACAGCACCGAGT 30266 Query 127812 ATGTTTCGCCGTGGACCATTTCATTATGGCA--CTGATACGCGTAGAAAGAGCGC 127864 ||||||| || || | ||| |||||| ||| || ||||||| ||||| Sbjct 30267 ATGTTTCCGAATGAACGTTCTCA--ATGGCAATCTGGAACCCGTAGAAGCAGCGC 30319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613499301094800