Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20cruzi_20[genbank_20GCA_5F002219105.1_202017- 07-14] 1,030 sequences; 50,993,492 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq253 150 3e-31 >seq253 Length=51549 Score = 150 bits (166), Expect = 3e-31 Identities = 508/775 (66%), Gaps = 36/775 (5%) Strand=Plus/Plus Query 159644 ACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAAT 159703 || |||||||| || ||||| ||||| |||| || || || |||||| || ||||| Sbjct 29696 ACCTTCTTCTCAAAGAAGTTTGTCTTTCCCTGCAGTGAGATCATTTCCATAAAGTCGAAT 29755 Query 159704 GGGTTCTTCACGTGATAG---CGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCC 159760 |||||||| || ||| ||| ||| || || ||| |||||| || || ||| Sbjct 29756 GGGTTCTTTGAGTTGTAGTGACGC-TCG--TTGCCAAGTGCCACCAGCAGCCGATCCGCC 29812 Query 159761 ACAAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGC 159820 ||||| || ||||| | ||||| || ||| ||||||||||||| || |||| Sbjct 29813 ACAAACTCTATGTACGTCGACATCAAATCTGCGTTCATCCCCAGCAGCCGCACAGGGATG 29872 Query 159821 GCTTCCGACAGA--AACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCT-GCGA---- 159873 | || ||||| ||||| |||||| || ||||| | | ||||| |||| Sbjct 29873 GAGTC--ACAGATGAACTCACGCTCAATGTCCACCGCACTGCAAATAATCTCGCGAATAC 29930 Query 159874 GACACGTTCGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTC 159933 | |||| ||| ||||| || ||||| || | ||| |||||||||||||| Sbjct 29931 GCTCCGTTGGTA-----GCTTGTTCACAATGTAGTTTTCGTACAACAGGCACGCAAAGTC 29985 Query 159934 GCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGA---TGAGGCCCGGCAT 159990 ||||| || || || || ||||||| || || || ||| | || || ||||| Sbjct 29986 CGTGTGCAAGCCTTCATCACGCGAGATGAGTTCATT--AC-TGAACGTCAGCCCGGGCAT 30042 Query 159991 GATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCA-CCGCTAAAAAAGATCCCCT 160049 | |||||| || ||||| || | | | || ||| | ||| ||| || || || | Sbjct 30043 CAGACCACGCTTCTTTAGCCAGAACA-GCGCACAGAAGGAGCCGGAAAAGAAAATACCTT 30101 Query 160050 CCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACC 160109 |||| |||||||| || || || | || |||| || | || || || |||||| Sbjct 30102 CCACCGCCGCAAAGGCAACAAGGCGTTCGGCAAACGAACTGCTGCTG---CGGATCCACC 30158 Query 160110 TTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATC 160169 | ||||| | ||||| || ||||||||| || | | ||||| |||| | Sbjct 30159 GAATCGCCCAGTTGGCCTTTTTCTGGATGCACGGAATTGTCGAAATGGCGTGCAACATGC 30218 Query 160170 TGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGT 160229 ||||| ||||| | ||| |||| ||| | | |||| |||||| |||| | | Sbjct 30219 GGTCCTTCTCCTCCGTATCTGTGATGTACGTATCCAACAGCACCGAGTATGTTTCCGAAT 30278 Query 160230 GCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATAC-TGCACC 160288 | || || || ||||| ||||| || |||||| | | ||||| | ||| || || Sbjct 30279 GAACGTTCTCAATGGCAATCTGGAACCCGTAGAAGCAGCGCACCTCC-GGTACTTGTACT 30337 Query 160289 TCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAA 160348 ||| |||||| || |||| || | || | || || || |||||||| Sbjct 30338 TCCGTCATGAACCGCTGCGCCAGGTTCTCCAGCACAATTCCATCACTTGCGGCAAAGAAC 30397 Query 160349 GCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGT 160403 |||| |||||| ||| || |||| ||| ||| | |||| ||||||| Sbjct 30398 GCCAGCACGTGCTTGATAAAGAACTTCTCCCCTTCGTTCA---TCTTCTCCCAGT 30449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795144962376800