Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20cruzi_20[genbank_20GCA_5F002219105.1_202017- 07-14] 1,030 sequences; 50,993,492 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq764 147 3e-30 >seq764 Length=631131 Score = 147 bits (162), Expect = 3e-30 Identities = 657/1024 (64%), Gaps = 35/1024 (3%) Strand=Plus/Plus Query 112323 ATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAG 112382 ||||||||||| ||||| ||||||| || ||||| |||||| | || || |||||| Sbjct 146482 ATGCTTTACAAGGACGCATGTAACCGTAAATCAAATCAGAAGAATGTTGGAGTCATCAAG 146541 Query 112383 AGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGT 112442 | || ||||| || ||||| || | || | |||| | ||||| || ||||| Sbjct 146542 TGCTCGAACCTTTGCACAGAGATTATAGAGTATACATCAAGGGATGAAGTCGCGGTGTGC 146601 Query 112443 AACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTAT 112502 ||||| || || || || || || | ||||||| ||||| ||| | | ||| | Sbjct 146602 AACCTTGCCTCCATTGCACTTCCACGCTTTGTGGATAAAGAGAGAAAAATTTACGATCAC 146661 Query 112503 GAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGA 112562 | || | || || ||||||| |||||||||||| || || |||| || ||| | Sbjct 146662 CAGCGGCTGTATGAGGTCACGAAAATTGTCACAAAAAATCTTAATCGAGTGATCGATCGT 146721 Query 112563 AATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGT 112619 || ||| || || ||| | || | || || | | ||||| ||||| Sbjct 146722 AACCATTATCCTGTACCCGAGTC-GCGCCGAA--GCAACGAGCTCAATCGTCCCATTGGA 146778 Query 112620 CTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCT-TTGTCGCCACGCATTTGATTCCGA 112678 | || || ||||| | ||||| || || || || || || |||| | | | Sbjct 146779 ATTGGCGTGCAAGGAATGGCGGACACTTTTATCCTGATGCGGCTAC-CATTCACATGCCA 146837 Query 112679 CGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGC 112738 || |||| | | | |||| ||| ||||| || || || ||| ||| | ||||| Sbjct 146838 GGAGGCGAGGAATTTGAATGAAGATATTTTTGAAACGATTTACTACGGTGCTGTGGAGGC 146897 Query 112739 GAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTC 112798 ||| ||| | || || || || || || |||| |||| || ||| || || Sbjct 146898 GAGCGTGGAACTCGCGGAAGTGGAGGGGCCCTATGCGCGGTTTGCAGGCAGTCCCGCGTC 146957 Query 112799 ACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACC---AAG-CTTCACTACGACT 112854 ||||| ||| || |||||| |||||| || || ||| ||| | | || | Sbjct 146958 GCAAGGCCAGCTACAGTTTGATCTGTGGG-AGCAGAAACCGCGAAGTGGCCGTTGGGATT 147016 Query 112855 GGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTT--TGATGGC 112912 |||| || | ||| | || || | | | | || | || | | || || | |||| Sbjct 147017 GGGATGCATTGAAGAAGCGTATGATGAAAAGTGGCATGCGGA--ATTCGTTACTTTTGGC 147074 Query 112913 ACCAATGCCAACAGCCTCCACCGCACAAAT-CTTGGGTAATAATGAATGCTTTGAACCCT 112971 |||||||| || || ||||| | || || |||||| || ||||| |||||||| || | Sbjct 147075 TCCAATGCCCACTGCATCCACTTCGCAGATACTTGGG-AACAATGAGTGCTTTGAGCCAT 147133 Query 112972 ACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGC 113031 || | || ||||| || | || || || |||||| | || |||||| Sbjct 147134 TTACCTCAAATATCTACGTGCGCCGAGTGCTGAGTGGTGAGTTTCCTGTGGTTAACAAGT 147193 Query 113032 ATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATG---AAGGATCTCA 113088 | || ||| || |||| || ||||| ||| | | || ||| || | ||| Sbjct 147194 ACCTTGTGATGGATCTCATTAAGCGGGGTCTGTGGAACGAAGAGATGCGCAATCAGATCA 147253 Query 113089 TGG--TGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAGAA 113146 | | | || ||| || | ||||| ||| || |||||| |||| | ||| | Sbjct 147254 TTGCCTACAA-----TGGCTCAGTGCAAAACATTAGGGGCATTCCAAATGACCTCAAGGA 147308 Query 113147 GTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCG 113206 | |||| || || ||||| || | ||||||| |||| || ||||| | || || Sbjct 147309 GCTGTATCGTGTTGTGTGGGAGATTCGGCAGAAGGATCTCATCGAGATGGCTGTGGACCG 147368 Query 113207 TGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGTCCAACGATGTC 113266 ||| ||||||||||| |||||||| |||||||||| |||||| |||||| || Sbjct 147369 TGGCAAGTTCATTGATCAGAGTCAAAGCTTGAATCTATTTTTGGAAAATCCAAC---TTC 147425 Query 113267 CA---AGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTA 113323 || |||| | || |||||| | | ||| | || || || ||||| ||||| Sbjct 147426 CAGCCAGCTGACATCCATGCACTTTTTTGCCTGGGAACGTGGCCTAAAGACGGGCATGTA 147485 Query 113324 TTAC 113327 |||| Sbjct 147486 TTAC 147489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620734407941600