Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20cruzi_20[genbank_20GCA_5F002219105.1_202017- 07-14] 1,030 sequences; 50,993,492 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq764 150 2e-31 seq669 84.2 3e-11 seq276 84.2 3e-11 seq75 84.2 3e-11 >seq764 Length=631131 Score = 150 bits (166), Expect = 2e-31 Identities = 674/1058 (64%), Gaps = 21/1058 (2%) Strand=Plus/Minus Query 109414 TAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAGAGTT-- 109471 |||||||| ||||| || || ||| | ||| || | | ||||| || | || | Sbjct 147488 TAATACATGCCCGTCTTTAGGCCACGTTCCCAGGCAAAAAAGTGCATGGATGTCAGCTGG 147429 Query 109472 -TGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAATCGA 109530 ||||| || ||| | |||| ||| | |||| ||| |||||| ||||| Sbjct 147428 CTGGAA---GTTGGATTTTCCAAAAATAGATTCAAGCTTTGACTCTGATCAATGAACTTG 147372 Query 109531 CCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTGTAC 109590 ||||| || | ||||| ||||||| | ||| || | ||| ||||| ||| ||| Sbjct 147371 CCACGGTCCACAGCCATCTCGATGAGATCCTTCTGCCGAATCTCCCACACAACACGATAC 147312 Query 109591 AAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACC--AGCCTTCA 109648 | | ||||| |||| |||||| || |||||||| | |||||| || | | Sbjct 147311 AGCTCCTTGAGGTCATTTGGAATGCCCCTAATGTTTTGCACTGAGCCATTGTAGGCA--A 147254 Query 109649 CCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAACAAGAT 109708 || ||| |||||||| ||| ||||| ||| ||||||| ||||| | Sbjct 147253 TGATCTGATTGCGCATCTCTTCGTTCCACAGACCCCGCTTAATGAGATCCATCACAAGGT 147194 Query 109709 GCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGT 109768 |||||| ||||| ||| |||||| || || || | |||||| || | || Sbjct 147193 ACTTGTTAACCACAGGAAACTCACCACTCAGCACTCGGCGCACGTAGATATTTGAGGTAA 147134 Query 109769 AGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAG 109828 | || || || ||||||||||| || || || || | |||||| || |||||||| |||| Sbjct 147133 ATGGCTCAAAGCACTCATTGTTCCCAAGTATCTGCGAAGTGGATGCAGTGGGCATTGGAG 147074 Query 109829 CCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTGCGTCCCAAT 109888 ||| || | || || | || | || | | |||| || ||| ||||||| Sbjct 147073 CCAAAAGTAACGAATTCCGCATGCCACTTTTCATCATACGCTTCTTCAATGCATCCCAAT 147014 Query 109889 CATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAG 109948 | |||| ||||| || || | ||||||| ||| || || || | | Sbjct 147013 CCCAACGGCCACTTCGCG--GTTTCTGC-TCCCACAGATCAAACTGTAGCTGGCCTTGCG 146957 Query 109949 CAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAG 110008 || ||| || || | | | || | |||||| || || || | || | Sbjct 146956 ACGCGGGACTGCCTGCAAACCGCGCATAGGGCCCCTCCACTTCCGCGAGTTCCACGCTCG 146897 Query 110009 CCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGGCGAGACTCTT 110068 |||| | || | | || || || |||||||||| |||||| | | ||| | Sbjct 146896 CCTCCACAGCACCGTAGTAAATCGTTTCAAAAATATCTTCATTCAAATTCCTCGCCTCCT 146837 Query 110069 CACAGTCGAAGGGAAGACCACAA-AGAATAAACACATCCGCTAGACCCTGAACACCGAGA 110127 || ||| || || || || || ||||| ||||| | || || || || | Sbjct 146836 GGCATGTGAATGGTAG-CCGCATCAGGATAAAAGTGTCCGCCATTCCTTGCACGCCAATT 146778 Query 110128 CCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTC---TACGGGGTAAAAGTTG 110184 |||||||| |||| | ||| || ||| | || ||| || ||| ||| Sbjct 146777 CCAATGGGACGATTGAGCTCGTT---GCTTCGGCGCGACTCGGGTACAGGATAATGGTTA 146721 Query 110185 CGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCG 110244 || ||||| || ||||| ||||| || || ||| | ||||||| |||| || | | Sbjct 146720 CGATCGATCACTCGATTAAGATTTTTTGTGACAATTTTCGTGACCTCATACAGCCGCTGG 146661 Query 110245 TAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAATAGACGCAAGATTG 110304 | |||| | |||| |||| |||| ||| | || || ||||| || ||||| ||| Sbjct 146660 TGATCGTAAATTTTTCTCTCTTTATCCACAAAGCGTGGAAGTGCAATGGAGGCAAGGTTG 146601 Query 110305 CACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTC 110364 ||||| | || || | || || || | ||| || || || | ||| || | | Sbjct 146600 CACACCGCGACTTCATCCCTTGATGTATACTCTATAATCTCTGTGCAAAGGTTCGAGCAC 146541 Query 110365 TTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATG 110424 || ||||| || | ||||||||||| ||||| ||| ||||| ||||| || |||||| Sbjct 146540 TTGATGACTCCAACATTCTTCTGATTTGATTTACGGTTACATGCGTCCTTGTAAAGCATG 146481 Query 110425 TATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGC 110462 | ||| || |||||| |||| || | ||| ||||| Sbjct 146480 AAAGGGACGCCCGTTTCCATCTGCGATTCGAGTATGGC 146443 Score = 84.2 bits (92), Expect = 3e-11 Identities = 162/239 (68%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 110887 CCAATACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCA 110946 ||||| ||||| || | ||||| || || || | | | |||| ||||||| || Sbjct 146015 CCAATGCCACCAGCTGATTTACTTATAACGGCGCATTGCTTCAATGTATCATAAATCCCC 145956 Query 110947 TCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTT 111006 ||||| || || |||||| ||||| |||||| ||| |||||| ||| ||| Sbjct 145955 TCAATACTGTCCTCCCGCATGGCAACAAGAAAACAAGAACTCATTTGAGGAAAAGGTGTT 145896 Query 111007 CCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGGGACATCTTGTTGTAT 111066 || |||||||| | ||| ||||| ||||| |||| || | ||||| | || ||| Sbjct 145895 CCGGCATTGAATAATGTCGGTGTGGCATGTGTGAAGTACCCAAGAGACATATGGTCATAT 145836 Query 111067 GTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACAT 111125 || || | || | ||| | |||||||||||||| || || |||| ||||| Sbjct 145835 GTCTCCTTTACGCGCTCCATATCCTCACCGTGAATACCAAGAGCGACGCGCAAAAACAT 145777 >seq669 Length=45990 Score = 84.2 bits (92), Expect = 3e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 136712 TCTTATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCC 136771 ||| |||||||||| ||||||||||||| || |||| |||||||||| ||||||| || Sbjct 37659 TCTCATAGCTCAGTCGGTTAGAGCGTGGGTCTAATAAGCCCAAGGTCACAGGTTCGACCC 37718 Query 136772 CCGTTGGGAACAGCTTTT 136789 | ||||||| || ||||| Sbjct 37719 CTGTTGGGAGCA-CTTTT 37735 >seq276 Length=230625 Score = 84.2 bits (92), Expect = 3e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 136712 TCTTATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCC 136771 ||| |||||||||| ||||||||||||| || |||| |||||||||| ||||||| || Sbjct 227522 TCTCATAGCTCAGTCGGTTAGAGCGTGGGTCTAATAAGCCCAAGGTCACAGGTTCGACCC 227463 Query 136772 CCGTTGGGAACAGCTTTT 136789 | ||||||| || ||||| Sbjct 227462 CTGTTGGGAGCA-CTTTT 227446 >seq75 Length=344318 Score = 84.2 bits (92), Expect = 3e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 136712 TCTTATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCC 136771 ||| |||||||||| ||||||||||||| || |||| |||||||||| ||||||| || Sbjct 237608 TCTCATAGCTCAGTCGGTTAGAGCGTGGGTCTAATAAGCCCAAGGTCACAGGTTCGACCC 237549 Query 136772 CCGTTGGGAACAGCTTTT 136789 | ||||||| || ||||| Sbjct 237548 CTGTTGGGAGCA-CTTTT 237532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588968416934000