Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20cruzi_20[genbank_20GCA_5F002219105.1_202017- 07-14] 1,030 sequences; 50,993,492 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq764 163 3e-35 seq115 86.0 7e-12 >seq764 Length=631131 Score = 163 bits (180), Expect = 3e-35 Identities = 689/1069 (64%), Gaps = 33/1069 (3%) Strand=Plus/Minus Query 105596 TAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGCATAGAAGAGAGCT-- 105653 || ||||| || ||||| || || ||| ||| || | | ||||| || | |||| Sbjct 147488 TAATACATGCCCGTCTTTAGGCCACGTTCCCAGGCAAAAAAGTGCATGGATGTCAGCTGG 147429 Query 105654 -TGGACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGGTCAATGAAGCGA 105712 |||| |||||| |||||| || ||||||| ||||||||||| |||||||| Sbjct 147428 CTGGAA---GTTGGATTTTCCAAAAATAGATTCAAGCTTTGACTCTGATCAATGAACTTG 147372 Query 105713 CCACGTTGTGCCGCCATATCAATGACATCCTTCATCTTGATTTCCCACACTGTGCGGTAG 105772 ||||| | | ||||| || |||| ||||||| | || |||||||| || || Sbjct 147371 CCACGGTCCACAGCCATCTCGATGAGATCCTTCTGCCGAATCTCCCACACAACACGATAC 147312 Query 105773 AGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACCCCCCGCCTTGACC 105832 || | ||||| |||| ||| || | || ||||| | ||| || | | | Sbjct 147311 AGCTCCTTGAGGTCATTTGGAATGCCCCTAATGTTTTGCACTGA---GCCATTGTAGGCA 147255 Query 105833 ATGA---GATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGA 105889 |||| ||| ||| || | | ||| ||||| ||| ||||||| | || || Sbjct 147254 ATGATCTGATTGCGCATCTCTTCGTTCCACAGACCCCGCTTAATGAGATCCATCACAAGG 147195 Query 105890 TGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTG 105949 | |||||| || | |||||| || || || | || ||||| || | || Sbjct 147194 TACTTGTTAACCACAGGAAACTCACCACTCAGCACTCGGCGCACGTAGATATTTGAGGTA 147135 Query 105950 TAGGGTTCAAAGCATTCATTATTACCCAAG-ATTTGTGCGGTGGAGGCTGTTGGCATTGG 106008 | || |||||||| ||||| || |||||| || || | ||||| || || |||||||| Sbjct 147134 AATGGCTCAAAGCACTCATTGTT-CCCAAGTATCTGCGAAGTGGATGCAGTGGGCATTGG 147076 Query 106009 TGCCATCA--AAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCC 106066 |||| | || || || || | || ||| | | || || | ||| | ||||| Sbjct 147075 AGCCAAAAGTAACGA--ATTCCGCATGCCACTTTTCATCATACGCTTCTTCAATGCATCC 147018 Query 106067 CAGTCGTAGTTG-AGCTT---GGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTG 106122 || || | | ||| |||||| | ||||||| |||||| || ||| ||||| Sbjct 147017 CAATCCCAACGGCCACTTCGCGGTTTCTGC-TCCCACAGATCAAACTGTAGCTGGCCTTG 146959 Query 106123 GGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCT 106182 |||| |||| || |||| | |||||| || | |||| || | ||| ||| Sbjct 146958 CGACGCGGGACTGCCTGCAAACCGCGCATAGGGCCCCTCCACTTCCGCGAGTTCCACGCT 146899 Query 106183 CGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTC 106242 |||||||| | ||| || || |||||||| ||| |||||| | | | || || Sbjct 146898 CGCCTCCACAGCACCGTAGTAAATCGTTTCAAAAATATCTTCATTCAAATTCCTCGCCTC 146839 Query 106243 ATCTGAATCAAATGCGTAGCGGCA-CAAAATAAATACATCCGCGAGACCTTGAACACCCA 106301 | | |||| ||||| ||| || ||||| ||||| | ||||| || || | Sbjct 146838 CTGGCATGTGAATG-GTAGCCGCATCAGGATAAAAGTGTCCGCCATTCCTTGCACGCCAA 146780 Query 106302 AACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTC---AACGGGATAAAAAT 106358 ||||| || | | || || ||| |||| | ||| || |||||| | Sbjct 146779 TTCCAATGGGACGATTGAGCTCGTT--GCTTCGGCGC-GACTCGGGTACAGGATAATGGT 146723 Query 106359 TTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTT 106418 | | || || ||||| || |||||||| || ||||| || |||| |||| || | Sbjct 146722 TACGATCGATCACTCGATTAAGATTTTTTGTGACAATTTTCGTGACCTCATACAGCCGCT 146663 Query 106419 CATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAAT 106478 | ||| || | |||||| || ||| | |||||| || || || || | | Sbjct 146662 GGTGATCGTAAATTTTTCTCTCTTTATCCACAAAGCGTGGAAGTGCAATGGAGGCAAGGT 146603 Query 106479 TGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAAC 106538 |||| || || |||||| | ||| ||||||| ||| ||||| || | ||| || | Sbjct 146602 TGCACACCGCGACTTCATCCCTTGATGTATACTCTATAATCTCTGTGCAAAGGTTCGAGC 146543 Query 106539 TCTTAATCGTCCCCAA-ATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGC 106597 ||| || | | |||| |||||| || || || ||| || || |||||||| ||| Sbjct 146542 ACTTGAT-GACTCCAACATTCTTCTGATTTGATTTACGGTTACATGCGTCCTTGTAAAGC 146484 Query 106598 ATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA 106646 ||| | || ||||| ||| |||| || | ||| || || ||||| Sbjct 146483 ATGAAAGGGACGCCCGTTTCCATCTGCGATTCGAGTATGGCAAACCACA 146435 >seq115 Length=430116 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 136166 TCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATCCA 136225 || |||||||||||||| ||||||| ||||||||||||| | ||||| ||||| ||||| Sbjct 15501 TCCTATAGTGTAGTGGTTATCACTTCGGACTTTGAATCCGAAAACCCAGGTTCGAATCCT 15560 Query 136226 GGTAGGA 136232 ||||||| Sbjct 15561 GGTAGGA 15567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589973203997200