Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20cruzi_20[genbank_20GCA_5F002219105.1_202017- 07-14] 1,030 sequences; 50,993,492 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq838 104 3e-17 seq547 104 3e-17 seq905 89.7 6e-13 seq101 87.8 2e-12 >seq838 Length=325542 Score = 104 bits (114), Expect = 3e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 157882 ATAGGTCAAGGATACTATGGAACCATCACACCCCCAGTCATACAGCGAAACGTTCTTGAG 157941 || || ||||||||||||| | | |||||||| || || |||| || |||||| | ||| Sbjct 271373 ATTGGGCAAGGATACTATGAATCGATCACACCACCTGTAATACTTCGTAACGTTATCGAG 271432 Query 157942 AATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTG 158001 |||||| |||||||| | |||||||| || || ||||| |||||||| || | | Sbjct 271433 AATCCTGCATGGTACACCCCATACACTCCTTACCAGGCTGAAATATCTCAAGGCCGTCTA 271492 Query 158002 GAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGATAGCAAAC 158061 || | | || |||| || | | || | ||| | |||| | | | ||||| Sbjct 271493 GAGTCCCTGTTGAATTTTCAGTCCATGATTATAGACTTGACAGCAATGAATTTGGCAAAT 271552 Query 158062 GCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103 |||||||| | ||| |||| |||||| || || |||||| Sbjct 271553 GCATCTCTTCTTGATCAAGCTACTGCATGTGCTGAGGCAATG 271594 >seq547 Length=44615 Score = 104 bits (114), Expect = 3e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 157882 ATAGGTCAAGGATACTATGGAACCATCACACCCCCAGTCATACAGCGAAACGTTCTTGAG 157941 || || ||||||||||||| | | |||||||| || || |||| || |||||| | ||| Sbjct 38956 ATTGGGCAAGGATACTATGAATCGATCACACCACCTGTAATACTTCGTAACGTTATCGAG 39015 Query 157942 AATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTG 158001 |||||| |||||||| | |||||||| || || ||||| |||||||| || | | Sbjct 39016 AATCCTGCATGGTACACCCCATACACTCCTTACCAGGCTGAAATATCTCAAGGCCGTCTA 39075 Query 158002 GAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGATAGCAAAC 158061 || | | || |||| || | | || | ||| | |||| | | | ||||| Sbjct 39076 GAGTCCCTGTTGAATTTTCAGTCCATGATTATAGACTTGACAGCAATGAATTTGGCAAAT 39135 Query 158062 GCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103 |||||||| | ||| |||| |||||| || || |||||| Sbjct 39136 GCATCTCTTCTTGATCAAGCTACTGCATGTGCTGAGGCAATG 39177 >seq905 Length=257450 Score = 89.7 bits (98), Expect = 6e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 157882 ATAGGTCAAGGATACTATGGAACCATCACACCCCCAGTCATACAGCGAAACGTTCTTGAG 157941 || || ||||||||||||| | | |||||||| || || |||| || |||||| | ||| Sbjct 19462 ATTGGGCAAGGATACTATGAATCAATCACACCACCCGTAATACTTCGTAACGTTATCGAG 19403 Query 157942 AATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTG 158001 |||||| |||| ||| | |||||||| | || ||||| |||||||| || | | Sbjct 19402 AATCCTGCATGGTGCACCCCATACACTCCTTTCCAGGCTGAAATATCTCAAGGCCGTCTA 19343 Query 158002 GAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGATAGCAAAC 158061 || | | || |||| || | | || | ||| | |||| | | ||||| Sbjct 19342 GAGTCCCTGTTGAATTTTCAGTCCATGATTATAGACTTGACAGCTGTGAATTTGGCAAAT 19283 Query 158062 GCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103 |||||||| | ||| |||| |||||| || || |||||| Sbjct 19282 GCATCTCTTCTTGATCAAGCTACTGCATGTGCTGAGGCAATG 19241 >seq101 Length=16766 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 157882 ATAGGTCAAGGATACTATGGAACCATCACACCCCCAGTCATACAGCGAAACGTTCTTGAG 157941 || || ||||||||||||| | | |||||||| || || |||| || |||||| | ||| Sbjct 14778 ATTGGGCAAGGATACTATGAATCGATCACACCACCTGTAATACTTCGTAACGTTATCGAG 14719 Query 157942 AATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGG 157994 |||||| |||| ||| | |||||||| | || ||||| |||||||| || Sbjct 14718 AATCCTGCATGGTGCACCCCATACACTCCTTTCCAGGCTGAAATATCTCAAGG 14666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588043628840800