Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20cruzi_20[genbank_20GCA_5F002219105.1_202017- 07-14] 1,030 sequences; 50,993,492 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq774 125 6e-24 >seq774 Length=330331 Score = 125 bits (138), Expect = 6e-24 Identities = 380/576 (66%), Gaps = 12/576 (2%) Strand=Plus/Plus Query 29805 CGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGG 29864 ||| || ||||||| ||| ||||||||||| || |||||||| || ||||||||||| Sbjct 147361 CGGCTCGACGTGATTGCTGTACACGTGAGCGTCACCAAGGGTGTGCACCAACTCTCCCGG 147420 Query 29865 TTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAA 29924 ||||| || | | || || | | || | ||| | |||| ||| ||||| || Sbjct 147421 CCGCAGCCCCGTCGCCTTTGCGATGAGGATGGTCAAGAGGGCGTAGGAGGCAATGTTGAA 147480 Query 29925 GGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTC 29984 || || || || |||||||| | || | |||||||||| || || || || || | Sbjct 147481 CGGGACACCAAGGCCCATGTCACATGAGCGCTGGTAGAGCATGCAAGACAGTTCCCCATT 147540 Query 29985 GCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTT 30044 ||||||||||||||| | ||||||||| || || ||||| | ||| | | Sbjct 147541 GCTCACGTAAAACTGTGCGAGCAGGTGGCACGGTGGTAGGGCCATCCTGGGCAAAGCGCT 147600 Query 30045 GGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCAC 30104 || ||||| || | || || || | || || || || || | | || || Sbjct 147601 CGGATTCCATGCCGTGAAGAGCATCCGGCGATCGTCAGGATTCGTCTTTAGTGTTTCAAC 147660 Query 30105 G-GCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCAT-GTCCGTGTAC 30162 | | ||| | |||||||||||| || |||| || | |||| || ||||| Sbjct 147661 GATTGCCTTG-ATTTGATCCACCCCCTGTCCGTCATAGT-TGGCATCATGGTGTGTGTAG 147718 Query 30163 TCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTG 30222 | || || || || | |||||| || ||||| || || || ||| ||| || ||| | Sbjct 147719 GCGGCACCAAAGTGACGCCACTGAAAGCCGTAGACAGGACCGAGG--TCCATC-TCCTCG 147775 Query 30223 TGCTC---GAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTT 30279 | ||| || ||| | |||| | ||| | | || |||||| ||||||| || | Sbjct 147776 TACTCTGTGAGGCCACGACTGTCAAGAAACGCGCGCGAGCCGTTGTCGTCCCATATGTGG 147835 Query 30280 ACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCC 30339 || ||||| || | || ||||| | ||| || | | ||||||||||| ||| Sbjct 147836 ACTCCCTTGTCACTTAACTTTTTGGCATATGTTTCGCCCCGTAGAAACCACAGCAGTTCC 147895 Query 30340 TC-CACGACGGCCTTCCAAAAGACCCTCTTGGTCGT 30374 || ||| || | |||||| |||| ||| || || Sbjct 147896 TCGCAC-ACACCGCGCCAAAAAACCCGCTTCGTTGT 147930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408612470572190