Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20cruzi_20[genbank_20GCA_5F002219105.1_202017- 07-14] 1,030 sequences; 50,993,492 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq253 120 6e-22 seq764 95.1 2e-14 >seq253 Length=51549 Score = 120 bits (132), Expect = 6e-22 Identities = 375/571 (66%), Gaps = 11/571 (2%) Strand=Plus/Minus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 ||||| ||| ||| ||||||| | || | | | | |||||| | || || || ||| Sbjct 30528 GATATCTGGAAGAAGTACAAGGAAGCCGAGAGCAGCATCTGGACGGTGGAGGAAATCGAT 30469 Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 || || ||| ||| | |||| | | | ||| ||| || ||| ||||| Sbjct 30468 TTGAGCAGTGACTTGGCGGACTGGGAGAAGATGAACGAAGGGGAGAAGTTCTTTATCAAG 30409 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCG-AGAG 25652 ||||| |||| |||||||| || |||||| || ||| ||||| ||| ||| || | Sbjct 30408 CACGTGCTGGCGTTCTTTGCCGCAAGTGATGGAATTGTGCTGGAGAACCTG-GCGCAGCG 30350 Query 25653 ATTCACCAGGGAAGTGCA-GTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCA 25711 |||| | |||||| || |||| ||||| || |||||||| |||||||| |||| Sbjct 30349 GTTCATGACGGAAGTACAAGTACC-GGAGGTGCGCTGCTTCTACGGGTTCCAGATTGCCA 30291 Query 25712 TCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCG 25771 | || || || || || || || | ||| || |||||||| ||||| | Sbjct 30290 TTGAGAACGTTCATTCGGAAACATACTCGGTGCTGTTGGATACGTACATCACAGATACGG 30231 Query 25772 CCGAGAGAGATCGGCTGTTTGGTGCCAT--CGAGCACATACCCAGCATCAAGAGGAAGGC 25829 |||| || || |||| ||||| ||| || || || ||||| ||| ||||| Sbjct 30230 AGGAGAAGGACCGCATGTTGCACGCCATTTCGA-CA-ATTCCGTGCATCCAGAAAAAGGC 30173 Query 25830 GCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGC 25889 ||||| || ||||||| |||| ||| | |||||| ||| || || || || Sbjct 30172 CAACTGGGCGATTCGGTGGATCCGCAGC---AGCAGTTCGTTTGCCGAACGCCTTGTTGC 30116 Query 25890 CTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAA 25949 |||||| || ||||| || || || || ||| || || || | |||||||| || Sbjct 30115 CTTTGCGGCGGTGGAAGGTATTTTCTTTTCCGGCTCCTTCTGTGCGCTGTTCTGGCTAAA 30056 Query 25950 GCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGG 26009 | || || |||||||||||| || || || |||||| | || || || Sbjct 30055 GAAGCGTGGTCTGATGCCCGGGCTGACGTTCAGTAATGAACTCATCTCGCGTGATGAAGG 29996 Query 26010 TCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 | |||| || ||||| |||||| | ||| Sbjct 29995 CTTGCACACGGACTTTGCGTGCCTGTTGTAC 29965 >seq764 Length=631131 Score = 95.1 bits (104), Expect = 2e-14 Identities = 135/182 (74%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 221687 TCCACAAAAGCGTTTAGG-GCAACGCTGGCCAGGTTACACACGGCCACCTCGTCC-TTGT 221744 |||||||| |||| | | |||| | ||| ||||| ||||| || || || ||| ||| Sbjct 146636 TCCACAAA-GCGTGGAAGTGCAATGGAGGCAAGGTTGCACACCGCGACTTCATCCCTTGA 146578 Query 221745 TGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGT 221804 || |||||| ||| |||||||| || ||||| |||||||||| || | | || | Sbjct 146577 TG-TATACTCTATAATCTCTGTGCAAAGGTTCGAGCACTTGATGACTCCAACATTCTTCT 146519 Query 221805 GATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCAT-AAAGGGACCGCCAGTCTCCAGC 221863 |||| || || || || ||||||||||| ||||| ||||||| |||| || |||| | Sbjct 146518 GATTTGATTTACGGTTACATGCGTCCTTGTAAAGCATGAAAGGGA-CGCCCGTTTCCATC 146460 Query 221864 TG 221865 || Sbjct 146459 TG 146458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928832841123200