Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20cruzi_20[genbank_20GCA_5F002219105.1_202017- 07-14] 1,030 sequences; 50,993,492 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq764 98.7 5e-16 >seq764 Length=631131 Score = 98.7 bits (108), Expect = 5e-16 Identities = 279/426 (65%), Gaps = 2/426 (0%) Strand=Plus/Minus Query 25931 TCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCT 25990 ||||| |||| || |||||||| | || ||||| ||||||| || || ||||| Sbjct 146288 TCCATGAATAGGTCAGGAATCCAAAGAGCGTAAAACAAATCTCGTGCCCTATGGTCTTCC 146229 Query 25991 TTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAA 26050 || || ||| || || | | | |||| ||| ||||| ||||| || ||||| Sbjct 146228 TTACCCGTATTTTTCTTCAAAAGAAGAAAATTAAATATATCACCATGCCAAGGCTCTAAG 146169 Query 26051 TAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCA 26110 || || ||||| ||||| | ||||| || ||||||||||| || | || || | | Sbjct 146168 TAAATGGCAAAGGCGCCTTTACGCTTTCCACCCCCTTGATCTACATAGCGAGCCGTGTTA 146109 Query 26111 TTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTG 26170 || |||| | ||| || || | ||| |||| || ||||| | | ||| | | Sbjct 146108 TTCCAAACACGTAGCATCGGTACAAGTCCGTTTGACTGGCCATTTGTCCCAGCAATGTAG 146049 Query 26171 GATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATA 26230 || | | | |||| ||| | || | || || |||||||| |||| ||| Sbjct 146048 CTCCCGGAACAGCGGATATTGTGCACGTGGACGCCAATGCCACCAGCTGATTTACTTATA 145989 Query 26231 GCTGCACAAT-CTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAA 26289 | || || | || || |||||| |||| || | || || || | ||| | | Sbjct 145988 ACGGCGCATTGCTTCAA-TGTATCATAAATCCCCTCAATACTGTCCTCCCGCATGGCAAC 145930 Query 26290 TAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGC 26349 | |||||||||| | ||| | | || |||||| | ||| |||||||||||||| || Sbjct 145929 AAGAAAACAAGAACTCATTTGAGGAAAAGGTGTTCCGGCATTGAATAATGTCGGTGTGGC 145870 Query 26350 ATGAGT 26355 ||| || Sbjct 145869 ATGTGT 145864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253036823557250