Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20cruzi_20[genbank_20GCA_5F002219105.1_202017- 07-14] 1,030 sequences; 50,993,492 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq838 104 3e-17 seq547 104 3e-17 seq905 89.7 6e-13 seq101 82.4 9e-11 >seq838 Length=325542 Score = 104 bits (114), Expect = 3e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 ||||||||| || |||||| |||| ||| | |||||||| ||||| | | | | Sbjct 271594 CATTGCCTCAGCACATGCAGTAGCTTGATCAAGAAGAGATGCATTTGCCAAATTCATTGC 271535 Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978 ||| | ||| | || | | || |||| || | | || | | || |||||||| Sbjct 271534 TGTCAAGTCTATAATCATGGACTGAAAATTCAACAGGGACTCTAGACGGCCTTGAGATAT 271475 Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAAGAACGTTTCGCTG 140038 ||||| || || |||||||| | |||||||| ||||||||| | |||||| || | Sbjct 271474 TTCAGCCTGGTAAGGAGTGTATGGGGTGTACCATGCAGGATTCTCGATAACGTTACGAAG 271415 Query 140039 TATGACTGGGGGTGTAATGGTTCCATAGTATCCTTGACCTAT 140080 ||| || || ||||| || | | ||||||||||||| || || Sbjct 271414 TATTACAGGTGGTGTGATCGATTCATAGTATCCTTGCCCAAT 271373 >seq547 Length=44615 Score = 104 bits (114), Expect = 3e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 ||||||||| || |||||| |||| ||| | |||||||| ||||| | | | | Sbjct 39177 CATTGCCTCAGCACATGCAGTAGCTTGATCAAGAAGAGATGCATTTGCCAAATTCATTGC 39118 Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978 ||| | ||| | || | | || |||| || | | || | | || |||||||| Sbjct 39117 TGTCAAGTCTATAATCATGGACTGAAAATTCAACAGGGACTCTAGACGGCCTTGAGATAT 39058 Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAAGAACGTTTCGCTG 140038 ||||| || || |||||||| | |||||||| ||||||||| | |||||| || | Sbjct 39057 TTCAGCCTGGTAAGGAGTGTATGGGGTGTACCATGCAGGATTCTCGATAACGTTACGAAG 38998 Query 140039 TATGACTGGGGGTGTAATGGTTCCATAGTATCCTTGACCTAT 140080 ||| || || ||||| || | | ||||||||||||| || || Sbjct 38997 TATTACAGGTGGTGTGATCGATTCATAGTATCCTTGCCCAAT 38956 >seq905 Length=257450 Score = 89.7 bits (98), Expect = 6e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 ||||||||| || |||||| |||| ||| | |||||||| ||||| | | | Sbjct 19241 CATTGCCTCAGCACATGCAGTAGCTTGATCAAGAAGAGATGCATTTGCCAAATTCACAGC 19300 Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978 ||| | ||| | || | | || |||| || | | || | | || |||||||| Sbjct 19301 TGTCAAGTCTATAATCATGGACTGAAAATTCAACAGGGACTCTAGACGGCCTTGAGATAT 19360 Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAAGAACGTTTCGCTG 140038 ||||| || | |||||||| | ||| |||| ||||||||| | |||||| || | Sbjct 19361 TTCAGCCTGGAAAGGAGTGTATGGGGTGCACCATGCAGGATTCTCGATAACGTTACGAAG 19420 Query 140039 TATGACTGGGGGTGTAATGGTTCCATAGTATCCTTGACCTAT 140080 ||| || || ||||| || | | ||||||||||||| || || Sbjct 19421 TATTACGGGTGGTGTGATTGATTCATAGTATCCTTGCCCAAT 19462 >seq101 Length=16766 Score = 82.4 bits (90), Expect = 9e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 139968 CCCTGAGATATCTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAAGA 140027 || |||||||| ||||| || | |||||||| | ||| |||| ||||||||| | | Sbjct 14666 CCTTGAGATATTTCAGCCTGGAAAGGAGTGTATGGGGTGCACCATGCAGGATTCTCGATA 14725 Query 140028 ACGTTTCGCTGTATGACTGGGGGTGTAATGGTTCCATAGTATCCTTGACCTAT 140080 ||||| || |||| || || ||||| || | | ||||||||||||| || || Sbjct 14726 ACGTTACGAAGTATTACAGGTGGTGTGATCGATTCATAGTATCCTTGCCCAAT 14778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578990945395600