Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20cruzi_20[genbank_20GCA_5F002219105.1_202017- 07-14] 1,030 sequences; 50,993,492 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq764 203 4e-47 >seq764 Length=631131 Score = 203 bits (224), Expect = 4e-47 Identities = 932/1451 (64%), Gaps = 48/1451 (3%) Strand=Plus/Plus Query 75503 GGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 75562 ||||||||||| || ||| | || || | || ||||| || || | || ||| || Sbjct 146059 GGGACAAATGGCCAGTCAAACGGACTTGTACCGATGCTACGTGTTTGGAATAACACGGCT 146118 Query 75563 CGCTATGTAAATCAAGCGGGGCGT---CGCAAGGGGTCCATCGCGGTCTACTTGGAACCA 75619 ||||||||| |||||| ||| | || || || || | || | ||||| || || Sbjct 146119 CGCTATGTAGATCAAGGGGGTGGAAAGCGTAAAGGCGCCTTTGCCATTTACTTAGAGCCT 146178 Query 75620 TGGCATGCCGATATCATGGAGTTCCTTGAGTT-ACGACTCAACCAAGGTGACGAAGAGGC 75678 ||||||| ||||| | | || ||| || | || | | ||| | ||||| Sbjct 146179 TGGCATGGTGATATATTTAATTTTCTTCTTTTGAAGAAAAATACG-GGTAAGGAAGACCA 146237 Query 75679 TCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGA 75738 | || ||||| | |||| | || |||||||| ||||| |||||| | || || || Sbjct 146238 TAGGGCACGAGATTTGTTTTACGCTCTTTGGATTCCTGACCTATTCATGGAACGTGT-GA 146296 Query 75739 GGAGGGTGGTCAA-TGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGAC-GCG 75796 ||| | | ||| ||| | || | || | | ||| ||||| || ||| || Sbjct 146297 AGAGCGGAGGCAAGTGGACGCTGATGGACCCGCATACGGCGCCAGGACTGAGTGACTGCT 146356 Query 75797 GTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCG 75856 ||| ||| || ||| || | ||| ||||||| |||| | ||| | | Sbjct 146357 ATGG-TGATGATTTTAAAAAGTTATACGAGGGGTATGAAAGGGAGAATCGAGGCGTCAAG 146415 Query 75857 ACTGTACCAGCCGCCGATG--TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAA 75914 || || | ||| | || | ||| || || ||| |||| |||| ||| || || Sbjct 146416 ACCGTGCAGGCC--CAATCCCTGTGGTTTGCCATACTCGAATCGCAGATGGAAACGGGCG 146473 Query 75915 CACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAA 75974 || | |||||||||||||| || |||||| || || || |||||| | ||| Sbjct 146474 TCCCTTTCATGCTTTACAAGGACGCATGTAACCGTAAATCAAATCAGAAGAATGTTGGAG 146533 Query 75975 CAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGG 76034 |||||| |||| || |||||||| || ||| ||||||| ||| | |||||| | Sbjct 146534 TCATCAAGTGCTCGAACCTTTGCACAGAGATTATAGAGTATACATCAAGGGATGAAGTCG 146593 Query 76035 CTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTT 76094 | || ||||| | || || || || |||||| | ||| || |||||| | || Sbjct 146594 CGGTGTGCAACCTTGCCTCCATTGCACTTCCACGCTTTGTGGATAAAGAGAGAAAAATTT 146653 Query 76095 TTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCA 76154 ||| | | || |||| |||| || ||||| || |||||||| || ||||| | Sbjct 146654 ACGATCACCAGCGGCTGTATGAGGTCACGAAAATTGTCACAAAAAATCTTAATCGAGTGA 146713 Query 76155 TTGACAGAAATTTTTATCCCGT---TGAGACTGCGCGAAAGTCTAATATGCGACACAGAC 76211 | || | || |||||| || ||| | |||| ||| || || | | | Sbjct 146714 TCGATCGTAACCATTATCCTGTACCCGAGTC-GCGCCGAAG--CAACGAGCTCAATCGTC 146770 Query 76212 CTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTG-TGCCGCTACGCATTT 76270 | ||||| | || || ||||| | ||||| ||||| || ||| ||||| |||| Sbjct 146771 CCATTGGAATTGGCGTGCAAGGAATGGCGGACACTTTTATCCTGATGCGGCTAC-CATTC 146829 Query 76271 GATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCC 76330 | | || || | | | |||||| ||| |||||||| || || ||| | Sbjct 146830 ACATGCCAGGAGGCGAGGAATTTGAATGAAGATATTTTTGAAACGATTTACTACGGTGCT 146889 Query 76331 CTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCT 76390 |||||||||| ||| | || |||| | || |||||| | |||| || | Sbjct 146890 GTGGAGGCGAGCGTGGAACTCGCGGAAGTGGAGGGGCCCTATGCGCGGTTTGCAGGCAGT 146949 Query 76391 CCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACC---AAG-CTCAA 76446 |||||||| ||||| ||| ||||||||| |||||| || |||||| ||| | Sbjct 146950 CCCGCGTCGCAAGGCCAGCTACAGTTTGATCTGTGGG-AGCAGAAACCGCGAAGTGGCCG 147008 Query 76447 CTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTT- 76505 | || ||||||| | ||| | || || | | | | || | || | | || || Sbjct 147009 TTGGGATTGGGATGCATTGAAGAAGCGTATGATGAAAAGTGGCATGCGGA--ATTCGTTA 147066 Query 76506 -TGATGGCACCAATGCCAACAGCCTCCACCGCACAAAT-CTTGGGTAATAATGAATGCTT 76563 | |||| |||||||| || || ||||| | || || |||||| || ||||| ||||| Sbjct 147067 CTTTTGGCTCCAATGCCCACTGCATCCACTTCGCAGATACTTGGG-AACAATGAGTGCTT 147125 Query 76564 TGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGT 76623 ||| |||| || |||| |||||| || | || || ||||||||| | || Sbjct 147126 TGAGCCATTTACCTCAAATATCTACGTGCGCCGAGTGCTGAGTGGTGAGTTTCCTGTGGT 147185 Query 76624 CAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATG---AA 76680 |||||| |||| || | || |||| ||| ||||| ||| | | || ||| || Sbjct 147186 TAACAAGTACCTTGTGATGGATCTCATTAAGCGGGGTCTGTGGAACGAAGAGATGCGCAA 147245 Query 76681 GGATCTCATGG--TGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGAT 76738 | |||| | | || ||| || | ||||| || | || ||| |||| Sbjct 147246 TCAGATCATTGCCTACAA-----TGGCTCAGTGCAAAACATTAGGGGCATTCCAAATGAC 147300 Query 76739 ATCAAGAATCTCTACCGCACAGTGTGGGAAATCAAGATGAAAGATGTCATTGACATGGCC 76798 ||||| | || || || |||||||| || | ||| ||| |||| || ||||| Sbjct 147301 CTCAAGGAGCTGTATCGTGTTGTGTGGGAGATTCGGCAGAAGGATCTCATCGAGATGGCT 147360 Query 76799 GCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGTCCA 76858 | || ||||| ||||||||||| |||||||| |||||||||| |||||| |||| Sbjct 147361 GTGGACCGTGGCAAGTTCATTGATCAGAGTCAAAGCTTGAATCTATTTTTGGAAAATCCA 147420 Query 76859 ACGATGTCCA---AGCTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCAAAACC 76915 || |||| |||| | || ||||| | | || ||| ||| || || || || Sbjct 147421 AC---TTCCAGCCAGCTGACATCCATGCACTTTTTTGCCTGGGAACGTGGCCTAAAGACG 147477 Query 76916 GGAATGTACTA 76926 || ||||| || Sbjct 147478 GGCATGTATTA 147488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596561919166400