Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20cruzi_20[genbank_20GCA_5F002219105.1_202017- 07-14] 1,030 sequences; 50,993,492 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq764 149 2e-30 >seq764 Length=631131 Score = 149 bits (164), Expect = 2e-30 Identities = 560/869 (64%), Gaps = 17/869 (2%) Strand=Plus/Minus Query 155587 CAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTAT--TCTACAATCTC 155644 |||| || || || || || ||||| | || | | | | | ||||| |||| |||||| Sbjct 146617 CAATGGAGGCAAGGTTGCACACCGC-GACTTCATCCCTT-GATGTATACTCTATAATCTC 146560 Query 155645 ACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACA 155704 ||| ||||| || | ||||||| || | ||||||||| || ||||||| |||||| Sbjct 146559 TGTGCAAAGGTTCGAGCACTTGATGACTCCAACATTCTTCTGATTTGATTTACGGTTACA 146500 Query 155705 AGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAG 155764 || |||||||| || ||| | ||| || || |||||||| | || || || | Sbjct 146499 TGCGTCCTTGTAAAGCATGAAAGGGACGCCCGTTTCCATCTGCGATTCGAGTATGGCAAA 146440 Query 155765 CCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATA 155824 ||| ||| |||| | | |||| | || ||| ||||| | || Sbjct 146439 CCACAGGGATTGGGCCTGCACGGTCTTGACGCCTCGATTCTCCCTTTCATACCCCTCGTA 146380 Query 155825 CAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAA 155884 | | || |||| ||||| || || ||||||||||| || | ||| ||| | Sbjct 146379 TAACTTTTTAAAATCATCACCATAGCAGTCACTCAGTCCTGGCGCCGTATGCGGGTCCAT 146320 Query 155885 CAGCGACCAAATTTTATTACCGATT-ACACGCTCCATAAATACATCACTCGCCCAAATAG 155943 ||||| ||| || | | || ||||| ||||| |||| ||| ||||| || Sbjct 146319 CAGCGTCCAC-TTGCCTCCGCTCTTCACACGTTCCATGAATAGGTCAGGAATCCAAAGAG 146261 Query 155944 CATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATT---CTTCCGTAGCTCTA 156000 | || || | || | |||| | || || | || ||| |||| || | Sbjct 146260 CGTAAAACAAATCTCGTGCCCTATGGTCTTCCTTACCCGTATTTTTCTTCAAAAG----A 146205 Query 156001 AGAATTCCTCA-ATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTC 156059 |||| | |||||| ||| ||||| | || || ||||| || || | | Sbjct 146204 AGAAAATTAAATATATCACCATGCCAAGGCTCTAAGTAAATGGCAAAGGCGCCTTTACGC 146145 Query 156060 TTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATA 156116 || |||||| ||||||||||| ||||| || ||||| | |||| |||||| || | | Sbjct 146144 TTTCCACCCCCTTGATCTACATAGCGAGCCGTGTTATTCCAAACACGTAGCATCGGTACA 146085 Query 156117 ATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGA 156176 | || || || |||||| || || ||| | || || |||| | ||| || Sbjct 146084 AGTCCGTTTGACTGGCCATTTGTCCCAGCAATGTAGCTCCCGGAACAGCGGATATTGTGC 146025 Query 156177 ATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTG 156236 | || | ||||| ||||| | ||||| || ||||||| ||| | |||| Sbjct 146024 ACGTGGACGCCAATGCCACCAGCTGATTTACTTATAACGGCGCATTGCTTCAATGTATCA 145965 Query 156237 AAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGT 156296 |||| || |||||| || || ||| | | ||| | || ||||| | |||||| Sbjct 145964 TAAATCCCCTCAATACTGTCCTCCCGCATGGCAACAAGAAAACAAGAACTCATTTGAGGA 145905 Query 156297 CGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATA 156356 |||||||| || ||||||| ||| ||||| ||||| | || ||| | ||||||| Sbjct 145904 AAAGGTGTTCCGGCATTGAATAATGTCGGTGTGGCATGTGTGAAGTACCCAAGAGACATA 145845 Query 156357 TAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTC 156416 | || ||||||||||| | ||| | || |||||||||| | || ||| | | Sbjct 145844 TGGTCATATGTCTCCTTTACGCGCTCCATATCCTCACCGTGAATACCAAGAGCGACGCGC 145785 Query 156417 ATCCACATATGCTGAGGACGCTCTACAAT 156445 | |||| ||||| |||||||| |||| Sbjct 145784 AAAAACATTTGCTGCGGACGCTCCGCAAT 145756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471798176607110