Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20cruzi_20[genbank_20GCA_5F002219105.1_202017- 07-14] 1,030 sequences; 50,993,492 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq253 127 2e-23 >seq253 Length=51549 Score = 127 bits (140), Expect = 2e-23 Identities = 216/313 (69%), Gaps = 0/313 (0%) Strand=Plus/Plus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 |||| || | |||||| ||||| |||||||| ||||| ||| | |||||| | |||| Sbjct 30273 CCGAATGAACGTTCTCAATGGCAATCTGGAACCCGTAGAAGCAGCGCACCTCCGGTACTT 30332 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 | || ||| |||||||||| ||||||||||| ||| || || || || ||||| | Sbjct 30333 GTACTTCCGTCATGAACCGCTGCGCCAGGTTCTCCAGCACAATTCCATCACTTGCGGCAA 30392 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGA 869810 | || ||||| ||||||||||||||| ||| | ||| | | | | |||||| Sbjct 30393 AGAACGCCAGCACGTGCTTGATAAAGAACTTCTCCCCTTCGTTCATCTTCTCCCAGTCCG 30452 Query 869811 CGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGT 869870 | ||| ||| | || | ||||| | |||||||| | |||||| | |||| Sbjct 30453 CCAAGTCACTGCTCAAATCGATTTCCTCCACCGTCCAGATGCTGCTCTCGGCTTCCTTGT 30512 Query 869871 ACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTCGC 869930 || ||| ||| | | ||||| ||| || |||| || | |||| || || || | Sbjct 30513 ACTTCTTCCAGATATCATGGTACTTGATCGGAAAGATCACGTAACGGTCAGGATTCTCAC 30572 Query 869931 GCAACAGGGGTTC 869943 |||| || ||||| Sbjct 30573 GCAAAAGCGGTTC 30585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107054673376510