Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20cruzi_20[genbank_20GCA_5F002219105.1_202017- 07-14] 1,030 sequences; 50,993,492 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq774 167 3e-36 >seq774 Length=330331 Score = 167 bits (184), Expect = 3e-36 Identities = 389/578 (67%), Gaps = 14/578 (2%) Strand=Plus/Plus Query 146923 GGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGC 146982 ||||| ||||| ||| ||| ||||| ||||| || ||||||||||| || || |||||| Sbjct 147362 GGCTCGACGTGATTGCTGTACACGTGAGCGTCACCAAGGGTGTGCACCAACTCTCCCGGC 147421 Query 146983 TTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAG 147042 || || ||| | | || | | | ||| | || | |||| ||| |||||||| Sbjct 147422 CGCAGCCCCGTCGCCTTTGCGATGAGGATGGTCAAGAGGGCGTAGGAGGCAATGTTGAAC 147481 Query 147043 GGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCG 147102 ||||| || ||||||||||| | || | |||||| ||| ||| || || ||||| | | Sbjct 147482 GGGACACCAAGGCCCATGTCACATGAGCGCTGGTAGAGCATGCAAGACAGTTCCCCATTG 147541 Query 147103 GCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCG 147162 |||||||||||| || | ||||||||| || || ||||| ||||| | Sbjct 147542 CTCACGTAAAACTGTGCGAGCAGGTGGCACGGTGGTAGGGCCATCCTGGGCAAAGCGCTC 147601 Query 147163 GGGTTCCAGGCCGAGACCACCAGCCGCCTGCTC-TCGGGGTTCCTCTTAA---TCTCTTC 147218 || ||||| |||| || | || ||| | | || || || ||| |||| | | || | Sbjct 147602 GGATTCCATGCCGTGAAGAGCATCCGGC-GATCGTCAGGATTCGTCTTTAGTGTTTCAAC 147660 Query 147219 GATAACCCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCAGTCCACGTA 147278 ||| | | | | || ||||| ||||| || | ||||| | | || ||| Sbjct 147661 GATTGC---CTTGATTTGATCCACCCCCTGTCCGTCATAGTTGGCATCATGGTGTGTGTA 147717 Query 147279 CCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTC--GCCGGGCTTT 147336 ||| |||||||| | |||||| |||||||| || || || ||||| | | | Sbjct 147718 GGCGGCACCAAAGTGACGCCACTGAAAGCCGTAGACAGGACCGAGGTCCATCTCCTCGTA 147777 Query 147337 CTGTGCGAGAAGCC-CGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCC 147395 || || ||| ||| || | | | |||||| || | || |||| | ||||||| ||| Sbjct 147778 CTCTGTGAG--GCCACGACTG-TCAAGAAACGCGCGCGAGCCGTTGTCGTCCCATATGTG 147834 Query 147396 CACTCCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTC 147455 ||||||||| | | || || | | || |||||| | ||||| ||||| || Sbjct 147835 GACTCCCTTGTCACTTAACTTTTTGGCATATGTTTCGCCCCGTAGAAACCACAGCAGTTC 147894 Query 147456 CTCCAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCA 147493 ||| | || || | |||||| |||| ||| || |||| Sbjct 147895 CTCGCACACACCGCGCCAAAAAACCCGCTTCGTTGTCA 147932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583480487592000