Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20cruzi_20[genbank_20GCA_5F002219105.1_202017- 07-14] 1,030 sequences; 50,993,492 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq253 185 1e-40 >seq253 Length=51549 Score = 185 bits (204), Expect = 1e-40 Identities = 281/394 (71%), Gaps = 11/394 (3%) Strand=Plus/Minus Query 1455885 TTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCT 1455944 || ||||||||||| || || || ||| ||||| || ||||| || ||| |||||||| Sbjct 30417 TTTATCAAGCACGTGCTGGCGTTCTTT-GCCGCAAGTGATGGAATTGTGCTGGAGAACCT 30359 Query 1455945 GGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCA 1456004 ||| || || |||| || || ||| | || |||| || | || ||||||||||| Sbjct 30358 GGCGCAGCGGTTCATGACGGAAGTACAAGTACCGGAGGTGCGCTGCTTCTACGGGTTCCA 30299 Query 1456005 GATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAA 1456064 ||| ||||| || ||| | || || ||||| |||||| | ||| | || || ||| ||| Sbjct 30298 GATTGCCATTGAGAACGTTCATTCGGAAACATACTCGGTGCTGTTGGATACGTACATCAC 30239 Query 1456065 GGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCA--TCGACACGGTGCCGTCGGTGAGG 1456122 || ||| |||||||||| | | || | ||||| |||||| | |||| | | Sbjct 30238 AGATACGGAGGAGAAGGACCGCATGTTGCACGCCATTTCGACA--ATTCCGTGCATCCAG 30181 Query 1456123 AAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGC 1456182 ||||||||| |||||||||| ||||||| | || || ||| |||||||| | Sbjct 30180 AAAAAGGCCAACTGGGCGATTCGGTGGATCCGC-AGCAGCAGTTCG----TTTGCCGAAC 30126 Query 1456183 GGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCT 1456241 | || || | |||||| || || || || || || || || ||| ||||| || | | Sbjct 30125 GCCTTGTTGCCTTTGCGGCGGTGGAAGGTATTTTCTTTTCCGGCTCCTTCTGTGCGCTGT 30066 Query 1456242 TTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 | ||||| |||||||| || || |||||||| || Sbjct 30065 TCTGGCTAAAGAAGCGTGGTCTGATGCCCGGGCT 30032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177711854606860