Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20cruzi_20[genbank_20GCA_5F002219105.1_202017- 07-14] 1,030 sequences; 50,993,492 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq253 141 7e-29 >seq253 Length=51549 Score = 141 bits (156), Expect = 7e-29 Identities = 256/372 (69%), Gaps = 2/372 (1%) Strand=Plus/Minus Query 43916 GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATT 43975 ||||| ||| |||| || | || || || || ||||| || |||||||| || || || Sbjct 30339 GAAGTACAAGTACCGGAGGTGCGCTGCTTCTACGGGTTCCAGATTGCCATTGAGAACGTT 30280 Query 43976 CATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCAT 44035 |||||||||| ||| | ||| | ||||||||||||| |||| | | |||||| | Sbjct 30279 CATTCGGAAACATACTCGGTGCTGTTGGATACGTACATCACAGATACGGAGGAGAAGGAC 30220 Query 44036 CGATTGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCT 44094 || |||| | || || ||| | || ||| || | | || || ||||||| | Sbjct 30219 CGCATGTTGCACGCCATTTCGACAATTCCGTGC-ATCCAGAAAAAGGCCAACTGGGCGAT 30161 Query 44095 TAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGA 44154 | ||||| | ||| |||| ||||| ||||| || ||||| | ||||| Sbjct 30160 TCGGTGGATCCGCAGCAGCAGTTCGTTTGCCGAACGCCTTGTTGCCTTTGCGGCGGTGGA 30101 Query 44155 AGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGAT 44214 ||| ||||||||||| || || || || | || ||| ||||||| || ||| |||| Sbjct 30100 AGGTATTTTCTTTTCCGGCTCCTTCTGTGCGCTGTTCTGGCTAAAGAAGCGTGGTCTGAT 30041 Query 44215 GCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTT 44274 ||| ||| ||||||| ||||| | || |||||||||||||| || || || Sbjct 30040 GCCCGGGCTGACGTTCAGTAATGAACTCATCTCGCGTGATGAAGGCTTGCACACGGACTT 29981 Query 44275 TGCTTGCTTGTT 44286 ||| ||| |||| Sbjct 29980 TGCGTGCCTGTT 29969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397451010685150