Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20cruzi_20[genbank_20GCA_5F002219105.1_202017- 07-14] 1,030 sequences; 50,993,492 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq253 118 1e-21 seq115 86.0 8e-12 >seq253 Length=51549 Score = 118 bits (130), Expect = 1e-21 Identities = 309/459 (67%), Gaps = 17/459 (4%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || |||||| ||||||||||||||| ||||| || | || || |||||||| Sbjct 29687 TACTCACCGACCTTCTTCTCAAAGAAGTTTGTCTTTCCCTGCAGTGAGATCATTTCCATA 29746 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACC---CCAACTTGTTTGAGGAGA 122487 ||||| ||||| ||||| | ||| | | | || | |||| | || || Sbjct 29747 AAGTCGAATGGGTTCTTTGAGTTGTA---GTGACGCTCGTTGCCAAGTGCCACCAGCAGC 29803 Query 122488 CGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTT- 122546 ||||||| |||| |||| |||||| |||||| || | |||||| || | || Sbjct 29804 CGATCCGCCACAAACTCTATGTACGTCGACATCAAATCTGCGTTCATCCCCAGCAGCCGC 29863 Query 122547 ACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGC 122606 ||| |||| | ||| |||||||| | |||||| || ||||| | || | Sbjct 29864 ACA-GGGATGGAGTCACAGATGAACTCACGCTCAATGTCCACCGCACTGCAAATAATCTC 29922 Query 122607 GTGGATA-GTTTCGGTAGTGGGTCTATTACGCAA---AGTCTT-GAAGAGCTC-CACGGC 122660 | | ||| | | || | || | | | || | ||| ||| || | | | | |||| | Sbjct 29923 GCGAATACGCTCCGTTGGTAGCT-TGTT-CACAATGTAGTTTTCGTACAACAGGCACG-C 29979 Query 122661 AAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGG 122720 ||| ||| ||| | || ||||| || || || |||||||| ||| || || || Sbjct 29980 AAAGTCCGTGTGCAAGCCTTCATCACGCGAGATGAGTTCATTACTGAACGTCAGCCCGGG 30039 Query 122721 CATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACC 122780 ||| ||||| |||||||| | ||| | | || ||||| || ||||| ||||| ||||| Sbjct 30040 CATCAGACCACGCTTCTTTAGCCAGAACAGCGCACAGAAGGAGCCGGAAAAGAAAATACC 30099 Query 122781 CTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGA 122819 ||||| |||||| |||| |||||||||||| || || Sbjct 30100 TTCCACCGCCGCAAAGGCAACAAGGCGTTCGGCAAACGA 30138 >seq115 Length=430116 Score = 86.0 bits (94), Expect = 8e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 145284 TCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATCCA 145343 || |||||||||||||| ||||||| ||||||||||||| | ||||| ||||| ||||| Sbjct 15501 TCCTATAGTGTAGTGGTTATCACTTCGGACTTTGAATCCGAAAACCCAGGTTCGAATCCT 15560 Query 145344 GGTAGGA 145350 ||||||| Sbjct 15561 GGTAGGA 15567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628023914088000