Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20cruzi_20[genbank_20GCA_5F002219105.1_202017- 07-14] 1,030 sequences; 50,993,492 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq764 212 8e-50 seq253 145 9e-30 >seq764 Length=631131 Score = 212 bits (234), Expect = 8e-50 Identities = 684/1054 (65%), Gaps = 17/1054 (2%) Strand=Plus/Minus Query 117842 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 117901 ||| ||||| |||||||| || || | | ||||||| | | ||||| || | || || Sbjct 147489 GTAATACATGCCCGTCTTTAGGCCACGTTCCCAGGCAAAAAAGTGCATGGATGTCAGCTG 147430 Query 117902 GGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 117961 | | |||||| |||||| || || |||| ||||| ||||| ||||| || Sbjct 147429 GCTGGAAGTTGGATTTTCCAAAAATAGATTCAAGCTTTGACTCTGATCAATGAACTTGCC 147370 Query 117962 CCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAG 118021 || ||| | ||||| || || | ||||||| | || ||||||||| | || || Sbjct 147369 ACGGTCCACAGCCATCTCGATGAGATCCTTCTGCCGAATCTCCCACACAACACGATACAG 147310 Query 118022 GTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCTTGACCAT 118081 | ||| | |||| ||| || || || ||||| | || ||| | | | || Sbjct 147309 CTCCTTGAGGTCATTTGGAATGCCCCTAATGTTTTGCACTGAGCCATTG---TAGGCAAT 147253 Query 118082 GAGATCCTT---CATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATG 118138 || | || ||| || | ||| ||||| ||| |||||||| ||| || | Sbjct 147252 GATCTGATTGCGCATCTCTTCGTTCCACAGACCCCGCTTAATGAGATCCATCACAAGGTA 147193 Query 118139 CTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTA 118198 ||| || || ||| ||||||||| || || | || |||||||| | || | Sbjct 147192 CTTGTTAACCACAGGAAACTCACCACTCAGCACTCGGCGCACGTAGATATTTGAGGTAAA 147133 Query 118199 TGGCTCAAAGCACTCATTGTTACCCAAG-ATTTGGGCTGTGGAGGCTGTGGGCATGGGTG 118257 ||||||||||||||||||||| |||||| || || | ||||| || |||||||| || | Sbjct 147132 TGGCTCAAAGCACTCATTGTT-CCCAAGTATCTGCGAAGTGGATGCAGTGGGCATTGGAG 147074 Query 118258 CCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGT 118317 ||| || | || || | || ||| | | || || | ||| | || ||||| | Sbjct 147073 CCAAAAGTAACGAATTCCGCATGCCACTTTTCATCATACGCTTCTTCAATGCATCCCAAT 147014 Query 118318 CGTAGTTGAGCTTTGTC---TCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACG 118374 | | | || | | | || ||||| ||||||||| || ||||| |||| Sbjct 147013 CCCAACGGCCACTTCGCGGTTTCTGCTCCCACAGATCAAACTGTAGCTGGCCTTGCGACG 146954 Query 118375 CTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCT 118434 | || || |||| | |||| || ||||| || ||||| | ||| |||||||| Sbjct 146953 CGGGACTGCCTGCAAACCGCGCATAGGGCCCCTCCACTTCCGCGAGTTCCACGCTCGCCT 146894 Query 118435 CGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGG 118494 | | || ||| || || ||||||||||| |||||| | | ||||| | | Sbjct 146893 CCACAGCACCGTAGTAAATCGTTTCAAAAATATCTTCATTCAAATTCCTCGCCTCCTGGC 146834 Query 118495 AATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAA 118554 | || | || || || ||||| ||||| | ||||| || || | |||| Sbjct 146833 ATGTGAATGGTAGCCGCATCAGGATAAAAGTGTCCGCCATTCCTTGCACGCCAATTCCAA 146774 Query 118555 TTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCC---ACGGGATAAAAATTCCTAT 118611 | || |||| | || |||| | ||| ||| || |||||| || | || Sbjct 146773 TGGGACGATTGAGCTCGTTG--CTTCGGCGCGA-CTCGGGTACAGGATAATGGTTACGAT 146717 Query 118612 CGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAAT 118671 |||| || | ||| |||||||| ||||||| || |||| |||| ||| | || || Sbjct 146716 CGATCACTCGATTAAGATTTTTTGTGACAATTTTCGTGACCTCATACAGCCGCTGGTGAT 146657 Query 118672 CAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACA 118731 | || | |||||| || ||| | ||||| || || || || || || |||| Sbjct 146656 CGTAAATTTTTCTCTCTTTATCCACAAAGCGTGGAAGTGCAATGGAGGCAAGGTTGCACA 146597 Query 118732 CAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAA 118791 | | | |||||| | || ||||||||||| || ||||| | ||| || | ||| | Sbjct 146596 CCGCGACTTCATCCCTTGATGTATACTCTATAATCTCTGTGCAAAGGTTCGAGCACTTGA 146537 Query 118792 TGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATG 118851 || || | ||||| |||||||| || |||||| || ||||||||||||||| | | Sbjct 146536 TGACTCCAACATTCTTCTGATTTGATTTACGGTTACATGCGTCCTTGTAAAGCATGAAAG 146477 Query 118852 GCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGC 118885 | ||||| ||| | || || | ||| || || Sbjct 146476 GGACGCCCGTTTCCATCTGCGATTCGAGTATGGC 146443 >seq253 Length=51549 Score = 145 bits (160), Expect = 9e-30 Identities = 434/653 (66%), Gaps = 40/653 (6%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || ||| |||||| |||||||||||||| || | || ||| | |||||| Sbjct 29687 TACTCACCGACCTTCTTCTCAAAGAAGTTTGTCTTTCCCTGCAGTGAGATCATTTCCATA 29746 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTG-----AGGA 129842 || || ||||||||||||||||| | || | ||| | || || | Sbjct 29747 AAGTCGAATGGGTTCTTTGAGTTGTAG-----TGACGCTCGTTGCCAAGTGCCACCAGCA 29801 Query 129843 GACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGT 129902 | ||||||| || |||| |||||| |||||| || | |||||| || | || Sbjct 29802 GCCGATCCGCCACAAACTCTATGTACGTCGACATCAAATCTGCGTTCATCCCCAGCAGCC 29861 Query 129903 T-ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATG 129961 ||| |||| | ||| |||||||| | |||||||||||| || | | || Sbjct 29862 GCACA-GGGATGGAGTCACAGATGAACTCACGCTCAATGTCCACCGCACTGCAAATAATC 29920 Query 129962 GCGTGAATGGTCTCCGT-GCCAGGTCTATTGCGCAA---AGTCTTG----AAGAGTTCCA 130013 || |||| |||||| | || | | || | ||| ||| || || || || Sbjct 29921 TCGCGAATACGCTCCGTTGGTAGCT-TGTT-CACAATGTAGTTTTCGTACAACAGG--CA 29976 Query 130014 CGGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGAC 130073 || |||| ||| ||| | || || ||||| |||||||||||||| ||| ||| | Sbjct 29977 CG-CAAAGTCCGTGTGCAAGCCTTCATCACGCGAGATGAGTTCATTACTGAACGTCAGCC 30035 Query 130074 CTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGA 130133 | ||||| ||||| |||||||| | |||||| | |||||| || ||||| || ||||| | Sbjct 30036 CGGGCATCAGACCACGCTTCTTTAGCCAGAACAGCGCACAGAAGGAGCCGGAAAAGAAAA 30095 Query 130134 TCCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGC-GGGACTTTGTATCA 130192 | || ||||| ||| || |||| || || || ||||| || | | || | || Sbjct 30096 TACCTTCCACCGCCGCAAAGGCAACAAGGCGTTCGGCAAACGAACTGCTGCTGCGGAT-- 30153 Query 130193 AACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC-TTC 130251 |||| |||||||| | |||||||||| ||| ||||| | ||| || || | | Sbjct 30154 --CCACCGAATCGCCCAGTTGGCCTTTTTCTGGATGCACGGAATTGTCGAAATGGCGTGC 30211 Query 130252 A--AAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATAT 130309 | | | | ||||||| || | |||| |||||||| |||| | || || ||| Sbjct 30212 AACATGCGGTCCTTCTCCTC---CGTATCTGTGATGTACGTATCCAACAGCACCGAGTAT 30268 Query 130310 GTTTCGCCATGGACCATTTCATTATGGCA--CTGATACGCGTAGAAAGAGCGC 130360 ||||| ||| || | ||| |||||| ||| || ||||||| ||||| Sbjct 30269 GTTTCCGAATGAACGTTCTCA--ATGGCAATCTGGAACCCGTAGAAGCAGCGC 30319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618427237646800