Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20cruzi_20[genbank_20GCA_5F002219105.1_202017- 07-14] 1,030 sequences; 50,993,492 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq764 132 6e-26 >seq764 Length=631131 Score = 132 bits (146), Expect = 6e-26 Identities = 652/1023 (64%), Gaps = 31/1023 (3%) Strand=Plus/Plus Query 104932 CATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAA 104991 |||||||||||| ||||| ||||||| || ||||| |||||| | || || ||||| Sbjct 146481 CATGCTTTACAAGGACGCATGTAACCGTAAATCAAATCAGAAGAATGTTGGAGTCATCAA 146540 Query 104992 GAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTG 105051 | | || || || || ||||| || | || | |||| | ||||| || ||||| Sbjct 146541 GTGCTCGAACCTTTGCACAGAGATTATAGAGTATACATCAAGGGATGAAGTCGCGGTGTG 146600 Query 105052 TAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTA 105111 ||||| || || || || || || | ||||||| ||||| ||| | | ||| | Sbjct 146601 CAACCTTGCCTCCATTGCACTTCCACGCTTTGTGGATAAAGAGAGAAAAATTTACGATCA 146660 Query 105112 TGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAG 105171 | || | || || ||||||| |||||| ||||| || || |||| || ||| | Sbjct 146661 CCAGCGGCTGTATGAGGTCACGAAAATTGTCACAAAAAATCTTAATCGAGTGATCGATCG 146720 Query 105172 AAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGG 105228 || ||| || || ||| | || | || || | | ||||| ||||| Sbjct 146721 TAACCATTATCCTGTACCCGAGTC-GCGCCGAA--GCAACGAGCTCAATCGTCCCATTGG 146777 Query 105229 TCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCT-TTGTCGCCACGCATTTGATTCCG 105287 | || || || || | ||||| || || || || || || |||| | | Sbjct 146778 AATTGGCGTGCAAGGAATGGCGGACACTTTTATCCTGATGCGGCTAC-CATTCACATGCC 146836 Query 105288 ACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGG 105347 | || |||| | | | |||| || ||||| || || || ||| ||| | |||| Sbjct 146837 AGGAGGCGAGGAATTTGAATGAAGATATTTTTGAAACGATTTACTACGGTGCTGTGGAGG 146896 Query 105348 CGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTT 105407 |||| || | || || || || || || |||| |||| || ||| || | Sbjct 146897 CGAGCGTGGAACTCGCGGAAGTGGAGGGGCCCTATGCGCGGTTTGCAGGCAGTCCCGCGT 146956 Query 105408 CACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACC---AAG-CTTCACTACGAC 105463 | ||||| ||| || |||||| |||||| || || ||| ||| | | || Sbjct 146957 CGCAAGGCCAGCTACAGTTTGATCTGTGGG-AGCAGAAACCGCGAAGTGGCCGTTGGGAT 147015 Query 105464 TGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCT 105523 ||||| || | ||| | || || | | | | || | || || | || ||||| Sbjct 147016 TGGGATGCATTGAAGAAGCGTATGATGAAAAGTGGCATGCGGAATTCGTTACTTTTGGCT 147075 Query 105524 CCAATGCCAACAGCCTCCACCGCACAAAT-CTTGGGTAATAATGAATGCTTTGAACCCTA 105582 |||||||| || || ||||| | || || |||||| || ||||| |||||||| || | Sbjct 147076 CCAATGCCCACTGCATCCACTTCGCAGATACTTGGG-AACAATGAGTGCTTTGAGCCATT 147134 Query 105583 CACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCA 105642 || | || ||||| || | || || || |||||| | || |||||| | Sbjct 147135 TACCTCAAATATCTACGTGCGCCGAGTGCTGAGTGGTGAGTTTCCTGTGGTTAACAAGTA 147194 Query 105643 TCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATG---AAGGATCTCAT 105699 || ||| || |||| || ||||| ||| | | || ||| || | |||| Sbjct 147195 CCTTGTGATGGATCTCATTAAGCGGGGTCTGTGGAACGAAGAGATGCGCAATCAGATCAT 147254 Query 105700 GG--TGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAAG 105757 | | || ||| || | ||||| ||| || ||||||||||| | ||| || Sbjct 147255 TGCCTACAA-----TGGCTCAGTGCAAAACATTAGGGGCATTCCAAATGACCTCAAGGAG 147309 Query 105758 TTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGT 105817 |||| || || ||||| || | ||||||| |||| || ||||| | || ||| Sbjct 147310 CTGTATCGTGTTGTGTGGGAGATTCGGCAGAAGGATCTCATCGAGATGGCTGTGGACCGT 147369 Query 105818 GGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTCTTCATGGAAAGTCCAACGATGTCC 105877 || ||||||||||| |||||||| ||||||| || |||||| |||||| ||| Sbjct 147370 GGCAAGTTCATTGATCAGAGTCAAAGCTTGAATCTATTTTTGGAAAATCCAAC---TTCC 147426 Query 105878 A---AGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTAT 105934 | |||| | || |||||| | | ||| | || || || ||||| |||||| Sbjct 147427 AGCCAGCTGACATCCATGCACTTTTTTGCCTGGGAACGTGGCCTAAAGACGGGCATGTAT 147486 Query 105935 TAC 105937 ||| Sbjct 147487 TAC 147489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583253290517200