Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20cruzi_20[genbank_20GCA_5F002219105.1_202017- 07-14] 1,030 sequences; 50,993,492 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq811 102 2e-16 seq764 89.7 2e-12 >seq811 Length=63688 Score = 102 bits (112), Expect = 2e-16 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || ||||| || || || ||||| || || || || || || | | || || || || Sbjct 35953 AGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGGCCGTCC 36012 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || || ||||| || || ||||| || || || ||| Sbjct 36013 TCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCC 36072 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG-TTCAACTTCAAGTGTAACTGT 140704 || || || || || || || ||||| | || | ||| ||| ||||| || | | || Sbjct 36073 TGGATCTTCGCCTTCACGTTCTCAATGGTGTC-GCTGGATTCCACTTCGAGAGCGATCGT 36131 Query 140705 CTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || ||||| || || || |||||||| Sbjct 36132 CTTGCCCGTCAGTGTCTTCACGAAGATCTGCAT 36164 Score = 102 bits (112), Expect = 2e-16 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || ||||| || || || ||||| || || || || || || | | || || || || Sbjct 36637 AGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGGCCGTCC 36696 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || || ||||| || || ||||| || || || ||| Sbjct 36697 TCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCC 36756 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG-TTCAACTTCAAGTGTAACTGT 140704 || || || || || || || ||||| | || | ||| ||| ||||| || | | || Sbjct 36757 TGGATCTTCGCCTTCACGTTCTCAATGGTGTC-GCTGGATTCCACTTCGAGCGCGATCGT 36815 Query 140705 CTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || ||||| || || || |||||||| Sbjct 36816 CTTGCCCGTCAGTGTCTTCACGAAGATCTGCAT 36848 Score = 102 bits (112), Expect = 2e-16 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || ||||| || || || ||||| || || || || || || | | || || || || Sbjct 37093 AGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGGCCGTCC 37152 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || || ||||| || || ||||| || || || ||| Sbjct 37153 TCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCC 37212 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG-TTCAACTTCAAGTGTAACTGT 140704 || || || || || || || ||||| | || | ||| ||| ||||| || | | || Sbjct 37213 TGGATCTTCGCCTTCACGTTCTCAATGGTGTC-GCTGGATTCCACTTCGAGCGCGATCGT 37271 Query 140705 CTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || ||||| || || || |||||||| Sbjct 37272 CTTGCCCGTCAGTGTCTTCACGAAGATCTGCAT 37304 Score = 102 bits (112), Expect = 2e-16 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || ||||| || || || ||||| || || || || || || | | || || || || Sbjct 37321 AGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGGCCGTCC 37380 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || || ||||| || || ||||| || || || ||| Sbjct 37381 TCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCC 37440 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG-TTCAACTTCAAGTGTAACTGT 140704 || || || || || || || ||||| | || | ||| ||| ||||| || | | || Sbjct 37441 TGGATCTTCGCCTTCACGTTCTCAATGGTGTC-GCTGGATTCCACTTCGAGCGCGATCGT 37499 Query 140705 CTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || ||||| || || || |||||||| Sbjct 37500 CTTGCCCGTCAGTGTCTTCACGAAGATCTGCAT 37532 Score = 102 bits (112), Expect = 2e-16 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || ||||| || || || ||||| || || || || || || | | || || || || Sbjct 37549 AGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGGCCGTCC 37608 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || || ||||| || || ||||| || || || ||| Sbjct 37609 TCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCC 37668 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG-TTCAACTTCAAGTGTAACTGT 140704 || || || || || || || ||||| | || | ||| ||| ||||| || | | || Sbjct 37669 TGGATCTTCGCCTTCACGTTCTCAATGGTGTC-GCTGGATTCCACTTCGAGCGCGATCGT 37727 Query 140705 CTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || ||||| || || || |||||||| Sbjct 37728 CTTGCCCGTCAGTGTCTTCACGAAGATCTGCAT 37760 Score = 102 bits (112), Expect = 2e-16 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || ||||| || || || ||||| || || || || || || | | || || || || Sbjct 38005 AGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGGCCGTCC 38064 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || || ||||| || || ||||| || || || ||| Sbjct 38065 TCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCC 38124 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG-TTCAACTTCAAGTGTAACTGT 140704 || || || || || || || ||||| | || | ||| ||| ||||| || | | || Sbjct 38125 TGGATCTTCGCCTTCACGTTCTCAATGGTGTC-GCTGGATTCCACTTCGAGCGCGATCGT 38183 Query 140705 CTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || ||||| || || || |||||||| Sbjct 38184 CTTGCCCGTCAGTGTCTTCACGAAGATCTGCAT 38216 Score = 102 bits (112), Expect = 2e-16 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || ||||| || || || ||||| || || || || || || | | || || || || Sbjct 38233 AGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGGCCGTCC 38292 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || || ||||| || || ||||| || || || ||| Sbjct 38293 TCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCC 38352 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG-TTCAACTTCAAGTGTAACTGT 140704 || || || || || || || ||||| | || | ||| ||| ||||| || | | || Sbjct 38353 TGGATCTTCGCCTTCACGTTCTCAATGGTGTC-GCTGGATTCCACTTCGAGAGCGATCGT 38411 Query 140705 CTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || ||||| || || || |||||||| Sbjct 38412 CTTGCCCGTCAGTGTCTTCACGAAGATCTGCAT 38444 Score = 102 bits (112), Expect = 2e-16 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || ||||| || || || ||||| || || || || || || | | || || || || Sbjct 38461 AGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGGCCGTCC 38520 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || || ||||| || || ||||| || || || ||| Sbjct 38521 TCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCC 38580 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG-TTCAACTTCAAGTGTAACTGT 140704 || || || || || || || ||||| | || | ||| ||| ||||| || | | || Sbjct 38581 TGGATCTTCGCCTTCACGTTCTCAATGGTGTC-GCTGGATTCCACTTCGAGCGCGATCGT 38639 Query 140705 CTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || ||||| || || || |||||||| Sbjct 38640 CTTGCCCGTCAGTGTCTTCACGAAGATCTGCAT 38672 Score = 102 bits (112), Expect = 2e-16 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || ||||| || || || ||||| || || || || || || | | || || || || Sbjct 38689 AGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGGCCGTCC 38748 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || || ||||| || || ||||| || || || ||| Sbjct 38749 TCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCC 38808 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG-TTCAACTTCAAGTGTAACTGT 140704 || || || || || || || ||||| | || | ||| ||| ||||| || | | || Sbjct 38809 TGGATCTTCGCCTTCACGTTCTCAATGGTGTC-GCTGGATTCCACTTCGAGCGCGATCGT 38867 Query 140705 CTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || ||||| || || || |||||||| Sbjct 38868 CTTGCCCGTCAGTGTCTTCACGAAGATCTGCAT 38900 Score = 102 bits (112), Expect = 2e-16 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || ||||| || || || ||||| || || || || || || | | || || || || Sbjct 39145 AGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGGCCGTCC 39204 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || || ||||| || || ||||| || || || ||| Sbjct 39205 TCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCC 39264 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG-TTCAACTTCAAGTGTAACTGT 140704 || || || || || || || ||||| | || | ||| ||| ||||| || | | || Sbjct 39265 TGGATCTTCGCCTTCACGTTCTCAATGGTGTC-GCTGGATTCCACTTCGAGCGCGATCGT 39323 Query 140705 CTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || ||||| || || || |||||||| Sbjct 39324 CTTGCCCGTCAGTGTCTTCACGAAGATCTGCAT 39356 >seq764 Length=631131 Score = 89.7 bits (98), Expect = 2e-12 Identities = 187/276 (68%), Gaps = 2/276 (1%) Strand=Plus/Minus Query 206449 TGGTCAATATATCGAGCTGTTTTATTAAATACGCCTAGCATAGGAATAATACCATTAGAA 206508 || || | ||| ||||| || ||||| | || | |||||| || | || || || || Sbjct 146132 TGATCTACATAGCGAGCCGTGTTATTCCAAACACGTAGCATCGGTACAAGTCCGTTTGAC 146073 Query 206509 GTTCCATTTGTTCCTCTAATATGACTGCCAGTCCCTCTAATATTATGTATATGTAATCCA 206568 |||||||| || ||| | || || | | | ||||| || | || | ||| Sbjct 146072 TGGCCATTTGTCCCAGCAATGTAGCTCCCGGAACAGCGGATATTGTGCACGTGGACGCCA 146013 Query 206569 ATTCCTCCTGCCCATTTTGAAATATTAGCACATTCTTTTAATGTATTATAAATTCCATCA 206628 || || || || |||| ||| || |||| || ||||||| |||||| || ||| Sbjct 146012 ATGCCACCAGCTGATTTACTTATAACGGCGCATTGCTTCAATGTATCATAAATCCCCTCA 145953 Query 206629 ACACTATCACTTTC-CATAGCAATTAAAAAACAAGAACTTAATTGTGGTCGTGGCGTTCC 206687 | ||| || || | ||| |||| | |||||||||||| | ||| || || ||||| Sbjct 145952 ATACTGTC-CTCCCGCATGGCAACAAGAAAACAAGAACTCATTTGAGGAAAAGGTGTTCC 145894 Query 206688 AGCATTAAATAAAGTAGGAGTAGCATGTGTAAAATA 206723 ||||| ||||| || || || |||||||| || || Sbjct 145893 GGCATTGAATAATGTCGGTGTGGCATGTGTGAAGTA 145858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515234403377090