Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20cruzi_20[genbank_20GCA_5F002219105.1_202017- 07-14] 1,030 sequences; 50,993,492 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq839 152 6e-32 seq253 104 3e-17 >seq839 Length=1084952 Score = 152 bits (168), Expect = 6e-32 Identities = 244/350 (70%), Gaps = 9/350 (3%) Strand=Plus/Plus Query 124494 AACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTCGGGAATCGACTGC 124553 ||||| | | ||||||| ||| ||||| | | ||| | || || || || | | Sbjct 132338 AACTCCCTCACGCTGTGCTGCTCGCCCGTCGCCAGCACCCAGTCGTCAGGCCTCTCCGCC 132397 Query 124554 TGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGCA 124613 |||| ||| ||||||||| | || |||||||||| |||||||||||||| ||| |||| Sbjct 132398 TGCAGCATGAGCCACATGCCGTGCACGTAGTCCTTCGCGTGCCCCCAGTCACGCAGGGCA 132457 Query 124614 TCCAGGTTTCCGAG------CTCGATTGGCTTGGCCGTCTTGTTCCACTCCGCCAAACCC 124667 | || ||| || || ||| | || || ||||| | | | |||| | | Sbjct 132458 TTCACGTTGCCAAGAAGCAGCTCCTTCTGCAGACCCTTCTTGATGCGCACCGCAGCCCGC 132517 Query 124668 AGTGTAATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAGA 124727 | | | |||| |||||||||| | |||||||| |||||||||||||||||| Sbjct 132518 ACTATCTTCTT---CGTCACAAACGTCGCGCCGCGTCGTGGCGACTCGTGGTTGAACAGA 132574 Query 124728 ATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATACCCA 124787 ||||| | |||||||| || ||||||||||| |||||||| || |||||| | | Sbjct 132575 ATGCCGTTGCACGCAAAAATACCGTACGACTCACGGTAGTTCACTGTGATCCAAAAGGCG 132634 Query 124788 AAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTC 124837 | ||||| | ||| | || ||||| || |||| ||| || || || || Sbjct 132635 TACAGCTTCGCCACCGCGTACGGGCTGCGCGGGTGGAAGGGCGTCTTCTC 132684 Score = 149 bits (164), Expect = 7e-31 Identities = 243/350 (69%), Gaps = 9/350 (3%) Strand=Plus/Plus Query 124494 AACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTCGGGAATCGACTGC 124553 ||||| | | ||||||| ||| ||||| | | ||| | || || || || | | Sbjct 137757 AACTCCCTCACGCTGTGCTGCTCGCCCGTCGCCAGCACCCAGTCGTCAGGCCTCTCCGCC 137816 Query 124554 TGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGCA 124613 |||| ||| ||||||||| | || |||||||||| |||||||||||||| ||| ||| Sbjct 137817 TGCAGCATGAGCCACATGCCGTGCACGTAGTCCTTCGCGTGCCCCCAGTCACGCAGAGCA 137876 Query 124614 TCCAGGTTTCCGAG------CTCGATTGGCTTGGCCGTCTTGTTCCACTCCGCCAAACCC 124667 | || ||| || || ||| | || || ||||| | | | |||| | | Sbjct 137877 TTCACGTTGCCAAGAAGCAGCTCCTTCTGCAGACCCTTCTTGATGCGCACCGCAGCCCGC 137936 Query 124668 AGTGTAATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAGA 124727 | | | |||| |||||||||| | |||||||| |||||||||||||||||| Sbjct 137937 ACTATCTTCTT---CGTCACAAACGTCGCGCCGCGTCGTGGCGACTCGTGGTTGAACAGA 137993 Query 124728 ATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATACCCA 124787 ||||| | |||||||| || ||||||||||| |||||||| || |||||| | | Sbjct 137994 ATGCCGTTGCACGCAAAAATACCGTACGACTCACGGTAGTTCACTGTGATCCAAAAGGCG 138053 Query 124788 AAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTC 124837 | ||||| | ||| | || ||||| || |||| ||| || || || || Sbjct 138054 TACAGCTTCGCCACCGCGTACGGGCTGCGCGGGTGGAAGGGCGTCTTCTC 138103 >seq253 Length=51549 Score = 104 bits (114), Expect = 3e-17 Identities = 562/879 (64%), Gaps = 41/879 (5%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || ||||||||| ||| ||||| ||||| ||||| || | || ||||| | ||||| Sbjct 29687 TACTCACCGACCTTCTTCTCAAAGAAGTTTGTCTTTCCCTGCAGTGAGATCATTTCCATA 29746 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCCCCAAACTGTGCCATGAGG--- 74579 ||||||| |||||||||| ||| | ||| | |||| |||||| || Sbjct 29747 AAGTCGAATGGGTTCTTTGAGTTGTAGTGACGCTCGTTGCCAA---GTGCCACCAGCAGC 29803 Query 74580 CGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTG 74639 |||||||||||||| | |||||| || ||| | || | ||| || | || | Sbjct 29804 CGATCCGCCACAAACTCTATGTACGTCGACATCAAATCTGCGTTCATCCCCAGCAGCC-G 29862 Query 74640 CAC-GGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACA--ATC 74696 ||| || | | || ||| ||||||| ||| | || | | || || | | ||| Sbjct 29863 CACAGGGATGGAGTCACAGATGAACTCACGCTCAATGTCC--ACCGCACTGCAAATAATC 29920 Query 74697 TTGTGAATGT----CTTTGGAAGGGCACTT-TTCCCTCAG--GTGAGAGTAAAGC-GTCA 74748 | | |||| | |||| || ||| ||| | | || ||| | | | || Sbjct 29921 TCGCGAATACGCTCCGTTGGTAG----CTTGTTCACAATGTAGTTTTCGTACAACAGGCA 29976 Query 74749 CGGCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGC 74808 || |||| ||| ||| |||||||||| | || | |||||| |||| || | Sbjct 29977 CG-CAAAGTCCGTGTGCAAGCCTTCATCACGCGAGATGAGTTCATTACTGAACGTCAGCC 30035 Query 74809 CAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGA 74868 | ||||| || ||||||||||| | ||| || | ||||||||||| || ||||| | Sbjct 30036 CGGGCATCAGACCACGCTTCTTTAGCCAGAACAGCGCACAGAAGGAGCCGGAAAAGAAAA 30095 Query 74869 TGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAAC-----GGTGCATCGGAAGT 74923 | ||||| || ||||||||| |||||||||| || ||| | ||| |||| | Sbjct 30096 TACCTTCCACCGCCGCAAAGGCAACAAGGCGTTCGGCAAACGAACTGCTGCTGCGGA--T 30153 Query 74924 CATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCG--ATCGCT 74981 | || | || ||||| | || ||| | || ||| ||| | | ||| || || Sbjct 30154 CCACCGAATC---GCCCAGTTGGCCTTT-TTCTGGATGCACGGA-ATTGTCGAAATGGCG 30208 Query 74982 TGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTAC 75041 || || | || ||||||| || | ||| ||| | | | || | || | ||||| Sbjct 30209 TGCAACATGCGGTCCTTCTCCTCCGTATCTGTGATGTACGTATCCAACAGCACCGAGTAT 30268 Query 75042 GTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCA 75101 || |||||||||| ||| || |||| || ||||||| | ||| |||| | Sbjct 30269 GTTTCCGAATGAACGTTCTCAATGGCAATCTGGAACCCGTAGAAGCAGCGCACCTCCGGT 30328 Query 75102 ATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCG 75161 | ||||| ||| | || | | | ||||||| || || || || ||| Sbjct 30329 ACTTGTACTTCCGTCATGAACCGCTGCGCCAGGTTCTCCAGCACAATTCCATCACTTGCG 30388 Query 75162 GCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAA 75221 || || || ||||| || ||||||||| ||| | || | | || ||||| Sbjct 30389 GCAAAGAACGCCAGCACGTGCTTGATAAAGAACTTCTCCCCTTCGTTCATCTTCTCCCAG 30448 Query 75222 TCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAACTCCCAATCGCCTT- 75280 ||| || ||| | |||||| || ||||| |||||||||| || | ||| ||| Sbjct 30449 TCCGCCAAGTCACTGCTCAAATCGATTTCCTCCACCGTCCAGATGCT-GCTCTCGGCTTC 30507 Query 75281 TTTGTACAAAGACCACAAGTCAGGGTAATTGATTGGAAA 75319 |||||| ||| | ||| |||| ||||| ||||| Sbjct 30508 CTTGTACTTCTTCCAGATATCATGGTACTTGATCGGAAA 30546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547208954594000