Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20cruzi_20[genbank_20GCA_5F002219105.1_202017- 07-14] 1,030 sequences; 50,993,492 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq774 122 7e-23 >seq774 Length=330331 Score = 122 bits (134), Expect = 7e-23 Identities = 379/576 (66%), Gaps = 12/576 (2%) Strand=Plus/Plus Query 29878 CGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGG 29937 ||| || |||| || ||| ||||||||||| || ||| |||| || ||||||||||| Sbjct 147361 CGGCTCGACGTGATTGCTGTACACGTGAGCGTCACCAAGGGTGTGCACCAACTCTCCCGG 147420 Query 29938 TTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAA 29997 ||||| || | | || || | | || | ||| | |||| ||| ||||| || Sbjct 147421 CCGCAGCCCCGTCGCCTTTGCGATGAGGATGGTCAAGAGGGCGTAGGAGGCAATGTTGAA 147480 Query 29998 GGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTC 30057 || || || || |||||||| | || | |||||||||| || || || || || | Sbjct 147481 CGGGACACCAAGGCCCATGTCACATGAGCGCTGGTAGAGCATGCAAGACAGTTCCCCATT 147540 Query 30058 GCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTT 30117 ||||||||||||||| | ||||||||| || || ||||| | ||| | | Sbjct 147541 GCTCACGTAAAACTGTGCGAGCAGGTGGCACGGTGGTAGGGCCATCCTGGGCAAAGCGCT 147600 Query 30118 GGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCAC 30177 || ||||| || | || || || | || || || || || | | || || Sbjct 147601 CGGATTCCATGCCGTGAAGAGCATCCGGCGATCGTCAGGATTCGTCTTTAGTGTTTCAAC 147660 Query 30178 G-GCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCAT-GTCCGTGTAC 30235 | | ||| | |||||||||||| || |||| || | |||| || ||||| Sbjct 147661 GATTGCCTTG-ATTTGATCCACCCCCTGTCCGTCATAGT-TGGCATCATGGTGTGTGTAG 147718 Query 30236 TCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTG 30295 | || || || || | |||||| || ||||| || || || ||| ||| || ||| | Sbjct 147719 GCGGCACCAAAGTGACGCCACTGAAAGCCGTAGACAGGACCGAGG--TCCATC-TCCTCG 147775 Query 30296 TGCTC---GAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTT 30352 | ||| || ||| | |||| | ||| | | || |||||| ||||||| || | Sbjct 147776 TACTCTGTGAGGCCACGACTGTCAAGAAACGCGCGCGAGCCGTTGTCGTCCCATATGTGG 147835 Query 30353 ACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCC 30412 || ||||| ||| | || ||||| | ||| || | | ||||||||||| ||| Sbjct 147836 ACTCCCTTGTCACTTAACTTTTTGGCATATGTTTCGCCCCGTAGAAACCACAGCAGTTCC 147895 Query 30413 TC-CACGACGGCCTTCCAAAAGACCCTCTTGGTCGT 30447 || ||| || | |||||| |||| ||| || || Sbjct 147896 TCGCAC-ACACCGCGCCAAAAAACCCGCTTCGTTGT 147930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406305299534760