Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20cruzi_20[genbank_20GCA_5F002219105.1_202017- 07-14] 1,030 sequences; 50,993,492 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq811 113 4e-20 seq234 104 2e-17 >seq811 Length=63688 Score = 113 bits (124), Expect = 4e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||||||||| || || ||||| |||||| | || |||| ||||||||| | Sbjct 41182 CCATGCAGATATTTGTGAAGACACTGACGGGCAAGACGATCGCTCTCGAAGTGGAATCCA 41123 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 |||| | ||||||| || || || || || ||||| || ||||| || || || | Sbjct 41122 GCGACACCATTGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGACC 41063 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | ||||| | || | ||| ||||| || |||| ||| | || | | || |||| Sbjct 41062 AGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTCGCAGACTACA 41003 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||| || |||||||| || | || | || |||| |||| || ||||| Sbjct 41002 ACATCCAGAAGGAGTCCACGCTGCACCTTGTGCTGCGCCTGCGCGGCGGCAT 40951 Score = 102 bits (112), Expect = 7e-17 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||||||||| || || ||||| |||||| | || | || ||||||||| | Sbjct 35274 CCATGCAGATATTTGTGAAGACACTGACGGGCAAGACGATCGCGCTCGAAGTGGAATCCA 35215 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 |||| | ||||||| || || || || || ||||| || ||||| || || || | Sbjct 35214 GCGACACCATTGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGACC 35155 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | ||||| | || | ||| ||||| || |||| ||| | || | | || |||| Sbjct 35154 AGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTCGCAGACTACA 35095 Query 27166 ACATTCAAAAGGAGTCGAC 27184 |||| || |||||||| || Sbjct 35094 ACATCCAGAAGGAGTCCAC 35076 >seq234 Length=19179 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||||||||| || || ||||| |||||| | || | || || |||||| | Sbjct 4726 CCATGCAGATATTTGTGAAGACACTGACGGGCAAGACGATCGCGCTCGAGGTGGAATCCA 4785 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 |||| | ||||||| || || || || || ||||| || ||||| || || || | Sbjct 4786 GCGACACCATTGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGACC 4845 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | ||||| | || | ||| ||||| || |||| ||| | || | | || |||| Sbjct 4846 AGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACACTCGCAGACTACA 4905 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||| || |||||||| || | || | || |||| |||| || ||||| Sbjct 4906 ACATCCAGAAGGAGTCCACGCTGCACCTTGTGCTGCGCCTGCGCGGCGGCAT 4957 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||||||||| || || ||||| |||||| | || | || || |||||| | Sbjct 5850 CCATGCAGATATTTGTGAAGACACTGACGGGCAAGACGATCGCGCTCGAGGTGGAATCCA 5909 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 |||| | ||||||| || || || || || ||||| || ||||| || || || | Sbjct 5910 GCGACACCATTGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGACC 5969 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | ||||| | || | ||| ||||| || |||| ||| | || | | || |||| Sbjct 5970 AGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTCGCAGACTACA 6029 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||| || |||||||| || | || | || |||| |||| || ||||| Sbjct 6030 ACATCCAGAAGGAGTCCACGCTGCACCTTGTGCTGCGCCTGCGCGGCGGCAT 6081 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||||||||| || || ||||| |||||| | || | || || |||||| | Sbjct 9029 CCATGCAGATATTTGTGAAGACACTGACGGGCAAGACGATCGCGCTCGAGGTGGAATCCA 9088 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 |||| | ||||||| || || || || || ||||| || ||||| || || || | Sbjct 9089 GCGACACCATTGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGACC 9148 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | ||||| | || | ||| ||||| || |||| ||| | || | | || |||| Sbjct 9149 AGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACGCTCGCAGACTACA 9208 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||| || |||||||| || | || | || |||| |||| || ||||| Sbjct 9209 ACATCCAGAAGGAGTCCACGCTGCACCTTGTGCTGCGCCTGCGCGGCGGCAT 9260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434912800425600