Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20cruzi_20[genbank_20GCA_5F002219105.1_202017- 07-14] 1,030 sequences; 50,993,492 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq774 91.5 1e-13 >seq774 Length=330331 Score = 91.5 bits (100), Expect = 1e-13 Identities = 446/708 (63%), Gaps = 5/708 (1%) Strand=Plus/Plus Query 6546 GCTCGATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAA 6605 |||||| ||| || ||| | || || || || | || ||||||| ||| || || Sbjct 147363 GCTCGACGTGATTGCTGTACACGTGAGCGTCACCAAGGGTGTGCACCAACTCTCCCGGCC 147422 Query 6606 CCAACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACG 6665 || |||| | | ||||| | | || | || ||||| ||||||||||||| Sbjct 147423 GCAGCCCCGTCGCCTTTGCGATGAGGATGGTCAAGAGGGCGTAGGAGGCAATGTTGAACG 147482 Query 6666 GCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCG 6725 | || || | |||||||| | || || || |||||| ||| ||||| |||||||| Sbjct 147483 GGACACCAAGGCCCATGTCACATGAGCGCTGGTAGAGCATGCAAGACAGTTCCCCATTGC 147542 Query 6726 CGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCG 6785 ||||| || || ||| ||||||||| || || |||||| || | | | ||| Sbjct 147543 TCACGTAAAACTGTGCGAGCAGGTGGCACGGTGGTAGGGCCATCCTGGGCAAAGCGCTCG 147602 Query 6786 GGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCA 6845 | ||||| || | | |||| | || ||||| ||| ||| | || || | | Sbjct 147603 GATTCCATGCCGTGAAGAGCATCCGGCGATCGTCAGGATTCGTCTTTAGTGTTTCAACGA 147662 Query 6846 CGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCG 6905 || | || ||| | |||||||| ||||| || || || | | Sbjct 147663 TTGCCTTGATTTGATCCACCCCCTGTCCGTCATAGTTGGCATCATGGTGTGTGTAGGCGG 147722 Query 6906 CCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATG 6965 | |||||||| | |||||| || |||||||| || || | ||| |||||| || Sbjct 147723 CACCAAAGTGACGCCACTGAAAGCCGTAGACAGGACCGAGGTCCATCTCCTCGTACTCTG 147782 Query 6966 GGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCC 7025 || || || |||| ||||| | || || |||| ||||||| || | || ||| Sbjct 147783 TGAGGCCACGACTGTCAAGAAACGCGCGCGAGCCGTTGTCGTCCCATATGTGGACTCCCT 147842 Query 7026 GGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCA 7085 | | || |||| | || | |||| | ||||||||||| |||||| || Sbjct 147843 TGTCACTTAACTTTTTGGCATATGTTTCGCCCCGTAGAAACCACAGCAGTTCCTCGCACA 147902 Query 7086 CGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAA----ATTCGCCCCGAAGGTTG 7141 | || ||| | || || ||||| |||| || || | ||| | || || | Sbjct 147903 CACCGCGCCAAAAAACCCGCTTCGTTGTCAAAAGTGGTAGGCGATT-GTTGCGGAGCGAG 147961 Query 7142 TATCGGGCCTGTGTGCCGAACACGGAGAGGGTCCCCGTCCCGGTCCGGTCCCCCTTCCGG 7201 | || ||||| ||| || | |||||| || ||| ||| || ||||| |||| Sbjct 147962 AAACGCATCTGTGCGCCAAAGATGGAGAGCGTGCCCACCCCAGTGCGGTCATGCTTCACA 148021 Query 7202 TAGCCCTCCCTGAGGATCCGCGCCACCTGATACAGATACTGCCACTCC 7249 | ||||| | | ||| || |||| | ||||||||| |||| Sbjct 148022 TTCCCCTCGCGTATGATGCGATCCACAAGGCTTAGATACTGCTCCTCC 148069 Score = 91.5 bits (100), Expect = 1e-13 Identities = 446/708 (63%), Gaps = 5/708 (1%) Strand=Plus/Minus Query 34096 GGAGTGGCAGTATCTGTATCAGGTGGCGCGGATCCTCAGGGAGGGCTACCGGAAGGGGGA 34155 |||| ||||||||| | |||| || ||| | | ||||| | |||| || Sbjct 148069 GGAGGAGCAGTATCTAAGCCTTGTGGATCGCATCATACGCGAGGGGAATGTGAAGCATGA 148010 Query 34156 CCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAACCTTCGGGG 34215 ||| || ||| ||| || |||||| | || ||| ||||| || | | || || Sbjct 148009 CCGCACTGGGGTGGGCACGCTCTCCATCTTTGGCGCACAGATGCGTTTCTCGCTCCGCAA 147950 Query 34216 CGAAT----TTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGC 34271 | ||| | || || |||| ||||| || || | ||| || ||| |||||| | Sbjct 147949 C-AATCGCCTACCACTTTTGACAACGAAGCGGGTTTTTTGGCGCGGTGTGTGCGAGGAAC 147891 Query 34272 TGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGA 34331 |||||||||| | |||| | || | |||| || | | ||| || | | Sbjct 147890 TGCTGTGGTTTCTACGGGGCGAAACATATGCCAAAAAGTTAAGTGACAAGGGAGTCCACA 147831 Query 34332 TCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGG 34391 | ||||||| |||| || || | ||||| |||| || || || || |||| Sbjct 147830 TATGGGACGACAACGGCTCGCGCGCGTTTCTTGACAGTCGTGGCCTCACAGAGTACGAGG 147771 Query 34392 AGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGG 34451 || ||| | || || |||||||| || |||||| | |||||||| || | || Sbjct 147770 AGATGGACCTCGGTCCTGTCTACGGCTTTCAGTGGCGTCACTTTGGTGCCGCCTACACAC 147711 Query 34452 GGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCT 34511 || || ||||| |||||||| | ||| || | || | | || || Sbjct 147710 ACCATGATGCCAACTATGACGGACAGGGGGTGGATCAAATCAAGGCAATCGTTGAAACAC 147651 Query 34512 TGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCC 34571 | ||| ||| ||||| || | |||| | | || ||||| |||| | | | | Sbjct 147650 TAAAGACGAATCCTGACGATCGCCGGATGCTCTTCACGGCATGGAATCCGAGCGCTTTGC 147591 Query 34572 CTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGC 34631 | |||||| || || ||||||||| ||| || || ||||| |||||||| | Sbjct 147590 CCAGGATGGCCCTACCACCGTGCCACCTGCTCGCACAGTTTTACGTGAGCAATGGGGAAC 147531 Query 34632 TGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTG 34691 |||| ||| |||||| || || || | |||||||| | || || ||||||||||||| Sbjct 147530 TGTCTTGCATGCTCTACCAGCGCTCATGTGACATGGGCCTTGGTGTCCCGTTCAACATTG 147471 Query 34692 CTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGC 34751 | ||||| || | || | | ||||| | | |||| || || || ||| Sbjct 147470 CCTCCTACGCCCTCTTGACCATCCTCATCGCAAAGGCGACGGGGCTGCGGCCGGGAGAGT 147411 Query 34752 TGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGC 34799 ||||||| || | || || || || | ||| || ||| |||||| Sbjct 147410 TGGTGCACACCCTTGGTGACGCTCACGTGTACAGCAATCACGTCGAGC 147363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448256628621600