Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20marinkellei_20[genbank_20GCA_5F000300495.1_202 012-10-01] 23,154 sequences; 34,226,154 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq5537 122 1e-22 seq11292 105 8e-18 >seq5537 Length=6528 Score = 122 bits (134), Expect = 1e-22 Identities = 494/768 (64%), Gaps = 18/768 (2%) Strand=Plus/Minus Query 53704 TGCAATAGATGCCAGATTACAAACGGCTACCTCAT--TAGCATCCGCATATTGTATTATC 53761 |||||| || || || || || || || ||||||| | || | ||| | ||| ||| Sbjct 4985 TGCAATGGAGGCGAGGTTGCACACCGCAACCTCATCCTTTGAT--GTATACTCTATAATC 4928 Query 53762 TCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTA 53821 || |||||||| || ||||||||| ||| | ||| | ||||| || |||| Sbjct 4927 TCCGTGCAAAGGTTCGAGCACTTGATGACTCCAATATTCTTCTGATTTGATTTACGGTTA 4868 Query 53822 CACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCT 53881 || |||||||| ||||| ||||| || || ||||| ||||| ||||| | || || Sbjct 4867 CATGCATCCTTGTAAAGCATGAAAGGGACGCCCGTTTCCATCTGCGATTCGAGTATAGCA 4808 Query 53882 TTCCAGACGACACGAGCCTTTATTATAGATTT---GTATCTCTTTTCTCTTTCGTATAGT 53938 ||| | | |||| | | || || | || ||||| |||||||| Sbjct 4807 AACCACAGGGATTGAGCTTGCAC---AGTCTTCACGCCTCGATTTTCCCTTTCGTACCCC 4751 Query 53939 --GTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTC-CAATCCAGGACATTCATCC 53995 ||||| || | ||| || || || | || | | || ||| || || | Sbjct 4750 TCGTATAACTTCTT--AAAATCATCACCGTAG-CAGTCACTCAGTCCTGGCGCCGTATGC 4694 Query 53996 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 54055 || |||||||| ||||| ||| | |||||| || | ||| ||||| ||||||||| Sbjct 4693 GGGTCCATCAACGTCCACTTTCCTCCGCTCTTCACACGCTCCATGAAGAGGTCAGGAATC 4634 Query 54056 CAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 54115 |||||||| ||| | ||||| | || || || || || || ||||| || || | | Sbjct 4633 CAAAGAGCGTAAAACAAATCTCGCGCCCTCTGGTCTTCCTTACCGGTATTTTTCTTCAAA 4574 Query 54116 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGC 54175 || || | |||||| |||||| || || ||||| |||| | | || Sbjct 4573 AGAAGAAAATTAAAGATATCACCATGCCAAGGCTCTAAGTAGATGGCAAAGGCGCCTTTA 4514 Query 54176 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 54235 |||||| || || || |||| || | || |||||||| |||| | | ||| || Sbjct 4513 CGTTTGCCACCGCCTTGGTCTACATAGCGTGCCGTGTTATTCCAAACACGTAGCATCGGT 4454 Query 54236 ATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATT- 54294 | || || || || ||||| ||||| | || ||||||||| || ||||| Sbjct 4453 ACAAGTCCGTTTGACTGGCCATTTGTCCCAGCAATGTAGCTTCCAGAACAGCGGATATTG 4394 Query 54295 ACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 54354 | ||| | || || || || || |||| || | || ||| | || || || Sbjct 4393 TGCACATGA-ACGCCAATACCACCAGCGGATTTACTTATAACGGCACATTGCTTCAATGT 4335 Query 54355 ATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTG 54414 |||||| || ||||| ||||| || || |||| || |||||||| | |||||| Sbjct 4334 ATCATAAATCCCCTCAATACTGTCCTCACGCATGGCAACAAGAAAACAAGAACTCATTTG 4275 Query 54415 GTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 54462 || | ||||| || || ||||| || || | || || ||||| Sbjct 4274 AGGAAAAGGCGTTCCGGCGTTGAATAATGTCGGTGTGGCATGTGTAAA 4227 >seq11292 Length=3062 Score = 105 bits (116), Expect = 8e-18 Identities = 268/398 (67%), Gaps = 10/398 (3%) Strand=Plus/Plus Query 24186 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCC 24244 || || || |||||||| ||||| || || || |||||||| | | |||| || || || Sbjct 1125 AAAGTCAGCCCGGGCATCAGGCCCCGTTTCTTCAGCCAAAACAGCG-CGCAGAAGGAGCC 1183 Query 24245 AGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGC-GC 24303 ||||||||||| ||||| || ||||||||||||| ||| | ||| || ||| | || Sbjct 1184 GGAAAAGAAAATACCTTCCACCGCCGCAAAGGCAACAAGACGTTCGGCA-AACGAACTGC 1242 Query 24304 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 24363 || | |||||| ||||| | |||||| || | | || || ||||| | Sbjct 1243 TGCTGCGGATCCACCGAATCGCCCAGTTGGCCTTTTTCTGAATGCATGGAATTGTTGAAA 1302 Query 24364 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCA--AAAG 24421 | || | | | | || || || | ||| ||| || | || | || | | Sbjct 1303 TGGCGTGCAGCATACGGTCCTTCTCCGTCGGATCCGTAATGTACATGTCCAACAGCACCG 1362 Query 24422 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGC 24481 | ||| |||||||||| | ||| |||||||| || || || |||||||| || | | Sbjct 1363 AGTAT--GTTTCCGAATGTACGTTCTCAATGGCAATCTGGAACCCGTAGAAGCAACGCAC 1420 Query 24482 CT-CGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGT 24540 || ||||| | |||||||| | || || | || | || || ||| ||||| | Sbjct 1421 CTCCGGTACT-TGTACTTCCGTCATGAACCGCTGCGCCAGGTTCTCCAGCACAATTCCAT 1479 Query 24541 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 24578 |||| || ||||| ||||||| || || || |||||| Sbjct 1480 CACTTGCAGCAAAGAACGCCAGCACGTGCTTGATAAAA 1517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593549762125920