Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20marinkellei_20[genbank_20GCA_5F000300495.1_202 012-10-01] 23,154 sequences; 34,226,154 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq11292 244 1e-59 seq11307 165 8e-36 seq11306 152 5e-32 seq14056 149 6e-31 >seq11292 Length=3062 Score = 244 bits (270), Expect = 1e-59 Identities = 431/623 (69%), Gaps = 5/623 (1%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 || ||||| ||||||||||| || ||| | |||||| || || || |||||| || Sbjct 1684 GAACCGCTTCTGCGCGAGAATCCTGACCGTTACGTGATCTTTCCGATTAAATACCACGAT 1625 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAG-GCGTCGTTCTGGACCGTCGAGGAGGTGGACCT 116694 || ||| | |||||| ||||||| || | | |||||| || ||||| | ||| | Sbjct 1624 ATCTGGAAGAAGTACAAGGAGGCCGAAAGCAGCAT-CTGGACGGTGGAGGAAATCGACTT 1566 Query 116695 GTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754 | || ||| | |||||||| ||| ||| ||| | ||| |||||||| Sbjct 1565 GAGCAGTGACTTGGCGGACTGGGAAAAGATGAGCGAGGGGGAGAGGTTTTTTATCAAGCA 1506 Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTT 116814 ||||||||| || || || || || || || || || ||||| |||| |||| || Sbjct 1505 CGTGCTGGCGTTCTTTGCTGCAAGTGATGGAATTGTGCTGGAGAACCTGGCGCAGCGGTT 1446 Query 116815 CGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGA 116874 | ||| || || || | |||| ||| ||||||||||| || ||||| ||||| || Sbjct 1445 CATGACGGAAGTACAAGTACCGGAGGTGCGTTGCTTCTACGGGTTCCAGATTGCCATTGA 1386 Query 116875 GAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGA 116934 |||||| || ||||||| || ||| || | |||| |||| | | || ||| Sbjct 1385 GAACGTACATTCGGAAACATACTCGGTGCTGTTGGACATGTACATTACGGATCCGACGGA 1326 Query 116935 GAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTG 116994 |||| |||| || || ||||||| || || || ||| | | | |||||| | || Sbjct 1325 GAAGGACCGTATGCTGCACGCCATTTCAACAATTCCATGCATTCAGAAAAAGGCCAACTG 1266 Query 116995 GGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGC 117054 |||| | || |||||| | |||| || || || | ||| || || || ||||| || Sbjct 1265 GGCGATTCGGTGGATCCGCAGCAG-CAGTTCG--TTTGCCGAACGTCTTGTTGCCTTTGC 1209 Query 117055 GGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACG 117114 ||| || || || | |||||||| ||| ||| ||| | |||||||| |||||||| Sbjct 1208 GGCGGTGGAAGGTATTTTCTTTTCCGGCTCCTTCTGCGCGCTGTTTTGGCTGAAGAAACG 1149 Query 117115 CGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCA 117174 ||||| |||||||| ||||||||||| || || ||||| || | ||||| || |||| Sbjct 1148 GGGCCTGATGCCCGGGCTGACTTTCAGTAATGAACTCATTTCGCGTGACGAAGGCTTGCA 1089 Query 117175 TTGCGACTTTGCCTGTTTGCTGT 117197 |||||||| || || ||| Sbjct 1088 CACGGACTTTGCGTGCCTGTTGT 1066 >seq11307 Length=654 Score = 165 bits (182), Expect = 8e-36 Identities = 175/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || |||||||| || ||| | |||| || || ||| | Sbjct 617 ATGCAGATCTTCGTGAAGACACTGACGGGCAAGACGATCGCGCTCGAGGTGGAGTCCAGC 558 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| |||||||| || ||||||| Sbjct 557 GACACCATTGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCA 499 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| |||| ||||| ||| |||||||| Sbjct 498 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGTCGCACGCTCGCAGACTACAA 439 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||||||||| || ||| ||||| || | ||||| Sbjct 438 CATCCAGAAGGAGTCCACGCTGCACCTTGTGCTGCGCCTGCGTGGCGG 391 >seq11306 Length=946 Score = 152 bits (168), Expect = 5e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || || |||||||| || ||| | |||| || || | | | Sbjct 728 ATGCAAATTTTTGTGAAGACACTGACGGGCAAGACGATCGCGCTCGAGGTGGAGTCTAGC 669 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | |||| || || | ||||| |||||||| || ||||||| Sbjct 668 GATACCATTGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCA 610 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| |||| ||||| ||| |||||||| Sbjct 609 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGTCGCACGCTCGCAGACTACAA 550 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||||||||| || ||| ||||| || | || || Sbjct 549 CATCCAGAAGGAGTCCACGCTGCACCTTGTGCTGCGCCTGCGCGGTGG 502 >seq14056 Length=822 Score = 149 bits (164), Expect = 6e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || |||||||| || || | |||| || || ||| | Sbjct 463 ATGCAGATCTTCGTGAAGACACTGACGGGCAAGACGATTGCACTCGAGGTGGAGTCCAGC 522 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | |||| || || | ||||| |||||||| || ||||||| Sbjct 523 GATACCATTGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCA 581 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| || | ||||| ||| |||||||| Sbjct 582 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACGCTCGCAGACTACAA 641 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| |||||||||| || ||| ||||| || | || ||| Sbjct 642 CATCCAGAAGGAGTCCACGCTGCACCTTGTGCTGCGCCTGCGCGGTGGC 690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515070082683040