Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20marinkellei_20[genbank_20GCA_5F000300495.1_202 012-10-01] 23,154 sequences; 34,226,154 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq11292 91.5 1e-13 >seq11292 Length=3062 Score = 91.5 bits (100), Expect = 1e-13 Identities = 296/448 (66%), Gaps = 19/448 (4%) Strand=Plus/Plus Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 ||||||||||||| || ||||||||||||| ||||| ||||| | ||||| || || Sbjct 780 TTTTGATATTCACCGACCTTCTTTTCAAAGAAGTTTGTCTTTCCCTGCAATGAGATCATT 839 Query 16004 TCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTA-TCGCAT--CCCAATTCCAAC 16060 |||||||| || || || || |||| | | ||| | | | ||| || | | ||||| Sbjct 840 TCCATAAAGTCGAATGGGTTCTTTG---AGTTGTAGTGACGCTCATTGCCAAGTGCCAAC 896 Query 16061 AATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATT 16120 || | || || |||||||| || || ||| | ||| | || |||||| || | Sbjct 897 AACAGTCGGTCTGCCACAAACTCGATGTACGTTGACATCAGGTCCGCGTTCATCCCCAGC 956 Query 16121 AATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCG--CTTCAATGA 16178 || |||||||| || || | || | || |||| |||| || ||| | Sbjct 957 AACCGCACAGGGATGGCGTCACAGATGAACTCACGCTCAATATCCACCGCACTGCAA--A 1014 Query 16179 TTATATCTCTTACTACACT-ATTTAACGGAGGGTT--TAAT-AAGTGTTTAAACATTATA 16234 | ||||| | | ||| || ||| | ||| ||| ||| || ||| | Sbjct 1015 TAATATCGC-GAATACGCTCCTTTGGTAGCTTGTTCACAATGTAGTTTTCGTACAACAGG 1073 Query 16235 CAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTT--TGAAAATGTAA 16292 || ||||| || ||||| |||||||| | || | || || ||||| || | Sbjct 1074 CACGCAAAGTCCGTGTGCAAGCCTTCGTCACGCGAAATGAGTTCATTACTGAAA--GTCA 1131 Query 16293 GACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGA 16352 | || ||||| || || ||||| || | |||||| | ||| || || || ||||||| Sbjct 1132 GCCCGGGCATCAGGCCCCGTTTCTTCAGCCAAAACAGCGCGCAGAAGGAGCCGGAAAAGA 1191 Query 16353 ATATACCTTCAACTGCGGCAAATGCAAC 16380 | |||||||| || || ||||| ||||| Sbjct 1192 AAATACCTTCCACCGCCGCAAAGGCAAC 1219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462378137464400