Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20marinkellei_20[genbank_20GCA_5F000300495.1_202 012-10-01] 23,154 sequences; 34,226,154 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq11292 273 2e-68 seq11307 98.7 9e-16 seq11306 96.9 3e-15 seq14056 84.2 2e-11 >seq11292 Length=3062 Score = 273 bits (302), Expect = 2e-68 Identities = 635/940 (68%), Gaps = 32/940 (3%) Strand=Plus/Minus Query 57507 GATGAACCACTTTTGCAAGAGAATCC---CCGTAGATTTGTCATGTTTCCGATTGAATAT 57563 || ||||| ||| ||| |||||||| |||| | || || ||||||||| |||| Sbjct 1687 GAAGAACCGCTTCTGCGCGAGAATCCTGACCGT---TACGTGATCTTTCCGATTAAATAC 1631 Query 57564 CCAGACATTTGGAACATGTACAAAAAGGCAGAA-GCATCGTTTTGGACCGTCGAAGAAGT 57622 | || || ||||| | |||||| |||| ||| ||| | | | |||| || || ||| | Sbjct 1630 CACGATATCTGGAAGAAGTACAAGGAGGCCGAAAGCAGCATCT-GGACGGTGGAGGAAAT 1572 Query 57623 AGACCTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTAT 57682 ||| || | || || || ||||| | | || ||||| |||||| Sbjct 1571 CGACTTGAGCAGTGACTTGGCGGACTGGGAAAAGATGAGCGAGGGGGAGAGGTTTTTTAT 1512 Query 57683 TAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGA 57742 || |||||| ||||||| || || ||| ||||| ||||| ||||| ||| || Sbjct 1511 CAAGCACGTGCTGGCGTTCTTTGCTGCAAGTGATGGAATTGTGCTGGAGAACCTGG-CGC 1453 Query 57743 AAGATTTTCACAA--GAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTG 57800 | | |||| | ||||| ||||| |||||| | | ||||| ||||| || || | Sbjct 1452 A-GCGGTTCATGACGGAAGTACAAGTACCGGAGGTGCGTTGCTTCTACGGGTTCCAGATT 1394 Query 57801 GCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA- 57859 |||||||| ||||| ||||| |||| || ||| | || | || | |||| | | ||| Sbjct 1393 GCCATTGAGAACGTACATTCGGAAACATACTCGGTGCTGTTGGACATGTACATTACGGAT 1334 Query 57860 -CAACGACGA-GAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAG 57917 | ||| || | | |||| ||| |||| || |||||| || || || Sbjct 1333 CCGACGGAGAAGGACCGTATGCTGC---ACGCCATTTCAACAATTCCATGCATTCAGAAA 1277 Query 57918 AAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTA 57977 ||||| | ||| | || ||||| ||| || | ||| ||||| | || Sbjct 1276 AAGGCCAACTGGGCGATTCGGTGGATCCGCAGCAGCAGTTC---GTTTGCCGAACGTCTT 1220 Query 57978 ATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT-TGCGGCAATATTTTG 58036 | || || || || || |||||||| |||||||| ||| ||| |||| | | ||||| Sbjct 1219 GTTGCCTTTGCGGCGGTGGAAGGTATTTTCTTTTCCGGCTCCTTCTGCG-CGCTGTTTTG 1161 Query 58037 GATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGA 58096 | |||||||||| |||||||||||||| ||||| || || || || | || ||||| || Sbjct 1160 GCTGAAGAAACGGGGCCTGATGCCCGGGCTGACTTTCAGTAATGAACTCATTTCGCGTGA 1101 Query 58097 CGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACT----CTCACATTGTCAATAAAC 58152 ||| || | || || || ||||||||||| ||||| || ||||||| || || | Sbjct 1100 CGAAGGCTTGCACACGGACTTTGCGTGCCTGTTGTACGAAAACT-ACATTGTGAACAAGC 1042 Query 58153 CGACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTG 58212 | ||| || || || ||||| | ||||| | || || |||||| Sbjct 1041 TACCAAAGGAGCGTATTCGCGATATTATTTGCAGTGCGGTGGATATTGAGCGTGAGTTCA 982 Query 58213 TCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACA 58272 || || ||| | || ||| |||| || |||||| || ||||||||| ||||| Sbjct 981 TCTGTGACGCCATCCCTGTGCGGTTGCTGGGGATGAACGCGGACCTGATGTCAACGTACA 922 Query 58273 TTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGGA--GAGCGTCATTACAACAC 58330 | |||||||| || ||| |||| ||| | | ||| | | | |||||||| |||||| | Sbjct 921 TCGAGTTTGTGGCAGACCGACTGTTGTTGGCACT--TGGCAATGAGCGTCACTACAACTC 864 Query 58331 GAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGa 58390 || || || || || |||||| | ||||||| | |||| ||||||||||| || || Sbjct 863 AAAGAACCCATTCGACTTTATGGAAATGATCTCATTGCAGGGAAAGACAAACTTCTTTGA 804 Query 58391 aaaaaaaGTTAGCGAATATCAAAAATACGGCGTGATGAGC 58430 ||| || || | ||||||||||| |||||||||||| Sbjct 803 AAAGAAGGTCGGTGAATATCAAAAGGCAGGCGTGATGAGC 764 >seq11307 Length=654 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||| ||||| |||||| | |||| || || | Sbjct 618 CATGCAGATCTTCGTGAAGACACTGACGGGCAAGACGATCGCGCTCGAGGTGGAGTCCAG 559 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | || | || || || || ||||||||| ||| | ||||| ||||| Sbjct 558 CGACACCATTGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCA 499 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || ||||||||||| ||| |||| ||| | || | || || || Sbjct 498 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGTCGCACGCTCGCAGACTACAA 439 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||| || || || || || || || || || || | ||| | |||||| Sbjct 438 CATCCAGAAGGAGTCCACGCTGCACCTTGTGCTGCGCCTGCGTGGCGGT 390 >seq11306 Length=946 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || |||||||||||| || ||||| ||||| ||||| |||||| | |||| || || | Sbjct 732 AACCATGCAAATTTTTGTGAAGACACTGACGGGCAAGACGATCGCGCTCGAGGTGGAGTC 673 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||| | | || | || || || || ||||||||| ||| | ||||| || Sbjct 672 TAGCGATACCATTGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGA 613 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 ||||||||| || || ||||||||||| ||| |||| ||| | || | || || Sbjct 612 CCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGTCGCACGCTCGCAGACTA 553 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || || || || || || || || || | ||| | || |||| Sbjct 552 CAACATCCAGAAGGAGTCCACGCTGCACCTTGTGCTGCGCCTGCGCGGTGGTA 500 >seq14056 Length=822 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||| ||||| ||||| | |||| || || | Sbjct 462 CATGCAGATCTTCGTGAAGACACTGACGGGCAAGACGATTGCACTCGAGGTGGAGTCCAG 521 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | | || | || || || || ||||||||| ||| | ||||| ||||| Sbjct 522 CGATACCATTGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCA 581 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||| || || ||||||||||| ||| |||| || Sbjct 582 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGA 617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445637384059680