Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20marinkellei_20[genbank_20GCA_5F000300495.1_202 012-10-01] 23,154 sequences; 34,226,154 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq11292 109 7e-19 seq5537 107 2e-18 >seq11292 Length=3062 Score = 109 bits (120), Expect = 7e-19 Identities = 289/434 (67%), Gaps = 8/434 (2%) Strand=Plus/Plus Query 33596 GTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCC 33655 ||||| || ||||| | ||| | ||| ||| || || || |||||||| ||||| Sbjct 1088 GTGCAAGCCTTCGTCACGCGAAATGAGTTCATTACTGAAAGTCAGCCCGGGCATCAGGCC 1147 Query 33656 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGC 33715 || || || |||||||| | | ||| || ||||||||||| || ||||| || || Sbjct 1148 CCGTTTCTTCAGCCAAAACAGCGCGCAGAAGGAGCCGGAAAAGAAAATACCTTCCACCGC 1207 Query 33716 AGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCTGTCATGTATCCACTTTTGAGCCC 33774 |||||||||| ||| | || || ||| | |||| | |||||| |||| Sbjct 1208 CGCAAAGGCAACAAGACGTTCGGCA-AACGAACTGCTGCTGCGGATCCACCGAATCGCCC 1266 Query 33775 AATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttttt 33834 | | |||||| || | | || || || ||| ||||| | | | | || || | Sbjct 1267 AGTTGGCCTTTTTCTGAATGCATGGAATTGTTGAAATGGCGTGCAGCATACGGTCCTTCT 1326 Query 33835 CATTACTATCTTTAACATAAGTATCGATCAAAA--GACTATACATTTCCGAATGAATGTT 33892 | | ||| ||| || | || | || | || ||| |||||||||| | ||| Sbjct 1327 CCGTCGGATCCGTAATGTACATGTCCAACAGCACCGAGTATG--TTTCCGAATGTACGTT 1384 Query 33893 TTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC-GGTAATCTGCACTTCTGTAC 33951 |||||||| ||||| || |||||||| || | |||| |||| | || ||||| || Sbjct 1385 CTCAATGGCAATCTGGAACCCGTAGAAGCAACGCACCTCCGGTACT-TGTACTTCCGTCA 1443 Query 33952 AAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATA 34011 || || | || | || || ||| ||||||||||| || ||||| ||||||| | Sbjct 1444 TGAACCGCTGCGCCAGGTTCTCCAGCACAATTCCATCACTTGCAGCAAAGAACGCCAGCA 1503 Query 34012 CATGTTTTATAAAA 34025 | || || |||||| Sbjct 1504 CGTGCTTGATAAAA 1517 >seq5537 Length=6528 Score = 107 bits (118), Expect = 2e-18 Identities = 688/1088 (63%), Gaps = 38/1088 (3%) Strand=Plus/Minus Query 62635 CATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGG 62694 |||| || |||||| || || |||| || ||||| | |||||||| ||||| | Sbjct 5298 CATAAGGCCCTTCCACTTCCGCGAGTTCCACGCTTGCCTCCACGGCACCGTAGTAAATCG 5239 Query 62695 TTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGA 62754 ||||||| || | | ||| | | | ||| ||| ||| |||||| | | Sbjct 5238 TTTCAAAAATATCTTCATTCAAAGTTCTTGCCTCCTGGCATGTAAATGGTAGCCGCATCA 5179 Query 62755 GAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAG 62814 | ||||||| |||||| | |||||| || ||||| || || || | || || || Sbjct 5178 GGATAAACGTGTCCGCCATTCCTTGTACGCCAATTCCAATGGGACGATTAAGCTCGTTGC 5119 Query 62815 AGATTTCAGCTT----CTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTT 62870 ||| || | | || | |||||||| ||| ||| || | | ||| |||||| Sbjct 5118 ----TTCGGCGTGACTCGGGTACAGGATAATGGTTACGATCAATCACTCGATTAAGATTT 5063 Query 62871 CT---GACAATTACTT--TGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATC-- 62923 | |||||| ||| ||||| ||| | | | | | || || | || || Sbjct 5062 TTTGTGACAAT--CTTCGTGACCTCATACAGCCGCTGGTGATCATACATTCTTTTCTCCT 5005 Query 62924 TATT-ACAAACATGTTCAA-TGCAACAGATGCCAGATTACACACGGCTACCTCAT--TAG 62979 ||| ||||| || || ||||| || || || || ||||| || ||||||| | Sbjct 5004 TATCCACAAAGC-GTGGAAGTGCAATGGAGGCGAGGTTGCACACCGCAACCTCATCCTTT 4946 Query 62980 CATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTT 63039 || | ||| | ||| ||||| |||||||| || |||||||| ||| | ||| | Sbjct 4945 GAT--GTATACTCTATAATCTCCGTGCAAAGGTTCGAGCACTTGATGACTCCAATATTCT 4888 Query 63040 GTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAA 63099 ||||| || |||||| |||||||| ||||| ||||| || || ||||| | Sbjct 4887 TCTGATTTGATTTACGGTTACATGCATCCTTGTAAAGCATGAAAGGGACGCCCGTTTCCA 4828 Query 63100 TCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTT---GTATC 63156 |||| ||||| | || || ||| | | | |||| | | || || | || Sbjct 4827 TCTGCGATTCGAGTATAGCAAACCACAGGGATTGAGCTTGCAC---AGTCTTCACGCCTC 4771 Query 63157 TCCTTTCTCTTTCGTATAGA--GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTC 63214 |||| |||||||| ||||| || | || || || || | || | | Sbjct 4770 GATTTTCCCTTTCGTACCCCTCGTATAACTTCTTA--AAATCATCACCGTAG-CAGTCAC 4714 Query 63215 -CAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 63273 || || || || ||| |||||||| ||||| ||| | |||||| || | Sbjct 4713 TCAGTCCTGGCGCCGTATGCGGGTCCATCAACGTCCACTTTCCTCCGCTCTTCACACGCT 4654 Query 63274 TCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGT 63333 ||| ||||| ||||||||||||||||| ||| | ||||| | || || || || | Sbjct 4653 CCATGAAGAGGTCAGGAATCCAAAGAGCGTAAAACAAATCTCGCGCCCTCTGGTCTTCCT 4594 Query 63334 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 63393 | || ||||| || || | | || || | |||||| |||||| || || |||| Sbjct 4593 TACCGGTATTTTTCTTCAAAAGAAGAAAATTAAAGATATCACCATGCCAAGGCTCTAAGT 4534 Query 63394 ATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 63453 | ||||| | | || |||||| || || || |||| || | || ||||||| Sbjct 4533 AGATGGCAAAGGCGCCTTTACGTTTGCCACCGCCTTGGTCTACATAGCGTGCCGTGTTAT 4474 Query 63454 TATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGC 63513 | |||| | | ||| || | || |||||||| ||||| || || | || |||| Sbjct 4473 TCCAAACACGTAGCATCGGTACAAGTCCGTTTGACTGGCCATTTGTCCCAGCAATGTAGC 4414 Query 63514 CTCCACTGGCACGAATATT-ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATT 63572 |||| || ||||| | ||| | || || || || || |||| || Sbjct 4413 TTCCAGAACAGCGGATATTGTGCACATGA-ACGCCAATACCACCAGCGGATTTACTTATA 4355 Query 63573 AATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGT 63632 | || ||| | || || || ||||| || || || || || || || |||| || Sbjct 4354 ACGGCACATTGCTTCAATGTATCATAAATCCCCTCAATACTGTCCTCACGCATGGCAACA 4295 Query 63633 AGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCG 63692 |||||||| | |||||| || || ||||| || || ||||| || || | || Sbjct 4294 AGAAAACAAGAACTCATTTGAGGAAAAGGCGTTCCGGCGTTGAATAATGTCGGTGTGGCA 4235 Query 63693 TGCGTAAA 63700 || ||||| Sbjct 4234 TGTGTAAA 4227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629635315041120