Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20marinkellei_20[genbank_20GCA_5F000300495.1_202 012-10-01] 23,154 sequences; 34,226,154 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq5537 87.8 2e-12 >seq5537 Length=6528 Score = 87.8 bits (96), Expect = 2e-12 Identities = 328/509 (64%), Gaps = 14/509 (3%) Strand=Plus/Minus Query 38017 ACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATAT 38076 || || ||||| || | ||||| | ||| | || ||| |||||| | || | Sbjct 4660 ACACGCTCCATGAAGAGGTCAGGAATCCAAAGAGCGTAAAACAAATCTCGCGCCCTCTGG 4601 Query 38077 TCTTCGTTCCCTACATTCTTTCTT-AAGCTTAGAAAATCGAATATATCAGCGTGCCATGG 38135 ||||| || || ||| |||||| || ||||||| || |||||| | ||||| || Sbjct 4600 TCTTCCTTACCGGTATT-TTTCTTCAAAAGAAGAAAATTAAAGATATCACCATGCCAAGG 4542 Query 38136 TTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAAC 38195 |||| || || | | || ||| | ||| |||| || || | | ||| | | Sbjct 4541 CTCTAAGTAGATGGCAAAGGCGCCTTTACGTTTGCCACCGCCTTGGTCTACATAGCGTGC 4482 Query 38196 TGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGA 38255 |||||||| | | | || ||| ||||| | || || || | ||| ||| | || | Sbjct 4481 CGTGTTATTCCAAACACGTAGCATCGGTACAAGTCCGTTTGACTGGCCATTTGTCCCAGC 4422 Query 38256 TATATAAGTACCCTTAGCTCGTATATTA--CTTATCGACAATCCTATTCCACCTGCATGT 38313 || || | || | || ||||| | || || || || ||||| || | Sbjct 4421 AATGTAGCTTCCAGAACAGCGGATATTGTGCACATGAACG--CCAATACCACCAGCGGAT 4364 Query 38314 TTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTT 38373 || ||| | || ||||| || || |||||| | || || || |||||||| || Sbjct 4363 TTACTTATAACGGCACATTGCTTCAATGTATCATAAATCCCCTCAATACTGTCCTCACGC 4304 Query 38374 ATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTA 38433 || | | | ||||||| | ||||||||| || || ||||||||||| |||||||| Sbjct 4303 ATGGCAACAAGAAAACAAGAACTCATTTGAGGAAAAGGCGTTCCGGCGTTGAATAATGTC 4244 Query 38434 GGAGATGCATGTATGAA----CCATTTTTCCGACAAATAATTATATGTTTCTATTACATC 38489 || | |||||| | || ||| | |||| || | |||||| || |||| Sbjct 4243 GGTGTGGCATGTGTAAAGTCCCCAAGT----GACATATGGTCATATGTCTCCTTTACGCG 4188 Query 38490 ATCTATATCACCGCCGTGAATACCTAGAG 38518 || ||||| | ||||||||||| |||| Sbjct 4187 TTCCATATCCTCACCGTGAATACCAAGAG 4159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468389197209760