Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20marinkellei_20[genbank_20GCA_5F000300495.1_202 012-10-01] 23,154 sequences; 34,226,154 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq5537 127 3e-24 >seq5537 Length=6528 Score = 127 bits (140), Expect = 3e-24 Identities = 691/1086 (64%), Gaps = 38/1086 (3%) Strand=Plus/Minus Query 65430 TATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTT 65489 || || |||||| || || ||||| || ||||| | |||||||| ||||| ||| Sbjct 5296 TAAGGCCCTTCCACTTCCGCGAGTTCCACGCTTGCCTCCACGGCACCGTAGTAAATCGTT 5237 Query 65490 TCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGA 65549 || || || | | ||| | | | ||| ||| ||| |||||| | || Sbjct 5236 TCAAAAATATCTTCATTCAAAGTTCTTGCCTCCTGGCATGTAAATGGTAGCCGCATCAGG 5177 Query 65550 ATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAG 65609 ||||||| ||| || | |||||| || ||||| || || || | || || || Sbjct 5176 ATAAACGTGTCCGCCATTCCTTGTACGCCAATTCCAATGGGACGATTAAGCTCGTTGC-- 5119 Query 65610 ATTTCAGCTT----CTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCT 65665 ||| || | | || | |||||||| ||| ||| || | | ||| |||||| | Sbjct 5118 --TTCGGCGTGACTCGGGTACAGGATAATGGTTACGATCAATCACTCGATTAAGATTTTT 5061 Query 65666 ---GACAATTACTT--TGACCACATCCTTCAGTTTGAGAAAATCAAATCGCTCATC--TA 65718 |||||| ||| ||||| ||| | | | | | || || | || | || || Sbjct 5060 TGTGACAAT--CTTCGTGACCTCATACAGCCGCTGGTGATCATACATTCTTTTCTCCTTA 5003 Query 65719 TT-ACAAACATGTTCAA-TGCAACAGATGCCAGATTACAAACGGCTACCTCAT--TAGCA 65774 | ||||| || || ||||| || || || || || || || ||||||| | | Sbjct 5002 TCCACAAAGC-GTGGAAGTGCAATGGAGGCGAGGTTGCACACCGCAACCTCATCCTTTGA 4944 Query 65775 TCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGT 65834 | | ||| | ||| ||||| |||||||| || ||||||||| ||| | ||| | Sbjct 4943 T--GTATACTCTATAATCTCCGTGCAAAGGTTCGAGCACTTGATGACTCCAATATTCTTC 4886 Query 65835 TGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATC 65894 ||||| || |||||| |||||||| ||||| ||||| || || ||||| ||| Sbjct 4885 TGATTTGATTTACGGTTACATGCATCCTTGTAAAGCATGAAAGGGACGCCCGTTTCCATC 4826 Query 65895 TGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTT---GTATCTC 65951 || ||||| | || || ||| | | | |||| | | || || | || Sbjct 4825 TGCGATTCGAGTATAGCAAACCACAGGGATTGAGCTTGCAC---AGTCTTCACGCCTCGA 4769 Query 65952 TTTTCTCTTTCGTATAGT--GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTC-C 66008 ||||| |||||||| ||||| || | || || || || | || | | | Sbjct 4768 TTTTCCCTTTCGTACCCCTCGTATAACTTCTTA--AAATCATCACCGTAG-CAGTCACTC 4712 Query 66009 AATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 66068 | ||| || || ||| |||||||| ||||| ||| | |||||| || | | Sbjct 4711 AGTCCTGGCGCCGTATGCGGGTCCATCAACGTCCACTTTCCTCCGCTCTTCACACGCTCC 4652 Query 66069 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTT 66128 || ||||| ||||||||||||||||| ||| ||||||| | || || || || || Sbjct 4651 ATGAAGAGGTCAGGAATCCAAAGAGCGTAAAACAAATCTCGCGCCCTCTGGTCTTCCTTA 4592 Query 66129 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTAT 66188 || ||||| || || | | || || | |||||| |||||| || || ||||| Sbjct 4591 CCGGTATTTTTCTTCAAAAGAAGAAAATTAAAGATATCACCATGCCAAGGCTCTAAGTAG 4532 Query 66189 ATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 66248 ||||| | | || |||||| || || || |||| || | || |||||||| Sbjct 4531 ATGGCAAAGGCGCCTTTACGTTTGCCACCGCCTTGGTCTACATAGCGTGCCGTGTTATTC 4472 Query 66249 TAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTT 66308 |||| | | ||| || | || || || || ||||| ||||| | || |||||| Sbjct 4471 CAAACACGTAGCATCGGTACAAGTCCGTTTGACTGGCCATTTGTCCCAGCAATGTAGCTT 4412 Query 66309 CCACTTGCACGAATATT-ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 66367 ||| || ||||| | ||| | || || || || || |||| || | Sbjct 4411 CCAGAACAGCGGATATTGTGCACATGA-ACGCCAATACCACCAGCGGATTTACTTATAAC 4353 Query 66368 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAG 66427 || ||| | || || |||||||| || ||||| ||||| || || |||| || || Sbjct 4352 GGCACATTGCTTCAATGTATCATAAATCCCCTCAATACTGTCCTCACGCATGGCAACAAG 4293 Query 66428 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 66487 |||||| | |||||| || | ||||| || || ||||| || || | || || Sbjct 4292 AAAACAAGAACTCATTTGAGGAAAAGGCGTTCCGGCGTTGAATAATGTCGGTGTGGCATG 4233 Query 66488 CGTAAA 66493 ||||| Sbjct 4232 TGTAAA 4227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657982308337360