Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20marinkellei_20[genbank_20GCA_5F000300495.1_202 012-10-01] 23,154 sequences; 34,226,154 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq11292 87.8 2e-12 >seq11292 Length=3062 Score = 87.8 bits (96), Expect = 2e-12 Identities = 229/344 (67%), Gaps = 4/344 (1%) Strand=Plus/Minus Query 52612 TTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGtt-tttttCGGGTAGTTT 52670 |||||||||||||| || || ||||| ||||||||| | || |||| ||| | || Sbjct 1234 TTTGCCGAACGTCTTGTTGCCTTTGCGGCGGTGGAAGGTATTTTCTTTTCCGGCTCCTTC 1175 Query 52671 TGCGGCAATATTTTACATCAAAACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAACGA 52730 ||| || | |||| | || | |||| | |||||||| || || || || || || Sbjct 1174 TGC-GCGCTGTTTTGGCTGAAGAAACGGGGCCTGATGCCCGGGCTGACTTTCAGTAATGA 1116 Query 52731 GTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGTGTTTGTATTATAATACGCG 52790 | || ||||| |||||||| ||||||| || |||||||| ||| || | | Sbjct 1115 ACTCATTTCGCGTGACGAAGGCTTGCACACGGACTTTGCGTGCCTGTTGTACGAAAACTA 1056 Query 52791 CGTTAAAGAAAAATTGTCATATGAAAAAATTCTAGACA-TGTTTAAAGAGGCCGTCGACA 52849 | || | || | || | || |||| || | | ||| || || || || | Sbjct 1055 CATTGTGAACAAGCTACCAAAGGAGCGTATTCGCGATATTATTTGCAG-TGCGGTGGATA 997 Query 52850 TTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGCATGAACGCGACCA 52909 |||| ||||| | ||||| | || || ||| |||| ||||||||| | Sbjct 996 TTGAGCGTGAGTTCATCTGTGACGCCATCCCTGTGCGGTTGCTGGGGATGAACGCGGACC 937 Query 52910 TGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATG 52953 |||||| ||||||||||||||| || ||| |||||||| || Sbjct 936 TGATGTCAACGTACATCGAGTTTGTGGCAGACCGACTGTTGTTG 893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495920426676800