Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20marinkellei_20[genbank_20GCA_5F000300495.1_202 012-10-01] 23,154 sequences; 34,226,154 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq5537 123 3e-23 >seq5537 Length=6528 Score = 123 bits (136), Expect = 3e-23 Identities = 489/762 (64%), Gaps = 8/762 (1%) Strand=Plus/Minus Query 71698 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCG--GCATATTGTATAATTT 71755 |||| || || || || || || || ||||||| | | | | ||| | |||||| | Sbjct 4984 GCAATGGAGGCGAGGTTGCACACCGCAACCTCATC--CTTTGATGTATACTCTATAATCT 4927 Query 71756 CAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTAC 71815 | |||||||| || ||||||||| ||| | ||| | ||||| || ||||| Sbjct 4926 CCGTGCAAAGGTTCGAGCACTTGATGACTCCAATATTCTTCTGATTTGATTTACGGTTAC 4867 Query 71816 ACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTT 71875 | |||||||| ||||| || || || || ||||| ||||| ||||| | || || Sbjct 4866 ATGCATCCTTGTAAAGCATGAAAGGGACGCCCGTTTCCATCTGCGATTCGAGTATAGCAA 4807 Query 71876 TCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTAT 71935 ||| | | | |||| | | | ||| | || ||||| |||||||| | Sbjct 4806 ACCACAGGGATTGAGCTTGCACAGTCTTCACGCCTCGATTTTCCCTTTCGTACCCCTCGT 4747 Query 71936 ATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAA-TCCAGGACATTCATTCGGACAC 71994 |||| | || || || || | ||| | || | ||| || || ||| | Sbjct 4746 ATAACTTCTTAAAATCATCACCGTA-GCAGTCACTCAGTCCTGGCGCCGTATGCGGGTCC 4688 Query 71995 ATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 72054 ||||| | ||||| ||| | || || || | ||| ||||| ||||||||||||||| Sbjct 4687 ATCAACGTCCACTTTCCTCCGCTCTTCACACGCTCCATGAAGAGGTCAGGAATCCAAAGA 4628 Query 72055 GCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 72114 || ||| | ||||| | || || || || || || ||||| || || | | || Sbjct 4627 GCGTAAAACAAATCTCGCGCCCTCTGGTCTTCCTTACCGGTATTTTTCTTCAAAAGAAGA 4568 Query 72115 AACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTG 72174 || | |||||| |||||| || || ||||| ||||| | | || |||||| Sbjct 4567 AAATTAAAGATATCACCATGCCAAGGCTCTAAGTAGATGGCAAAGGCGCCTTTACGTTTG 4508 Query 72175 TTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 72234 || || || |||| || | || |||||||| |||| | | ||| || | || Sbjct 4507 CCACCGCCTTGGTCTACATAGCGTGCCGTGTTATTCCAAACACGTAGCATCGGTACAAGT 4448 Query 72235 CCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTG-CTAAT 72293 || || || ||||| ||||| | || ||||||||| || |||||| | Sbjct 4447 CCGTTTGACTGGCCATTTGTCCCAGCAATGTAGCTTCCAGAACAGCGGATATTGTGCACA 4388 Query 72294 TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATA 72353 ||| | || || || || || |||| || | || ||| | || || |||||||| Sbjct 4387 TGA-ACGCCAATACCACCAGCGGATTTACTTATAACGGCACATTGCTTCAATGTATCATA 4329 Query 72354 GATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 72413 || ||||| ||||| || || |||| || |||||||| | |||||| || Sbjct 4328 AATCCCCTCAATACTGTCCTCACGCATGGCAACAAGAAAACAAGAACTCATTTGAGGAAA 4269 Query 72414 ACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 72455 | ||||| || || ||||| || || | || || ||||| Sbjct 4268 AGGCGTTCCGGCGTTGAATAATGTCGGTGTGGCATGTGTAAA 4227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670944955537040