Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20marinkellei_20[genbank_20GCA_5F000300495.1_202 012-10-01] 23,154 sequences; 34,226,154 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq11292 116 5e-21 seq1649 114 2e-20 >seq11292 Length=3062 Score = 116 bits (128), Expect = 5e-21 Identities = 245/359 (68%), Gaps = 15/359 (4%) Strand=Plus/Minus Query 125220 CCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATG 125279 || |||||| ||||| ||||| ||||| || ||||||||||| || ||||||| Sbjct 1426 CCGGAGGTGCGTTGCTTCTACGGGTTCCAGATTGCCATTGAGAACGTACATTCGGAAACA 1367 Query 125280 TACTCTACACTGATTGACATGTACATTCGCGATCCGCAACGTAAAC--AC---ATGCTCT 125334 ||||| ||| | |||||||||||| |||||| ||| | | || ||||| Sbjct 1366 TACTCGGTGCTGTTGGACATGTACATTACGGATCCG--ACGGAGAAGGACCGTATGCTGC 1309 Query 125335 TTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGA 125394 |||| || || | || | || | |||||||| | |||| ||||||||||| Sbjct 1308 ---ACGCCATTTCAACAATTCCATGCATTCAGAAAAAGGCCAACTGGGCGATTCGGTGGA 1252 Query 125395 TCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCA 125454 || | || ||||| ||||| | || || || || || || || || || | Sbjct 1251 TC---CGCAGCAGCAGTTCGTTTGCCGAACGTCTTGTTGCCTTTGCGGCGGTGGAAGGTA 1195 Query 125455 TCTTCTTTT-CGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCC 125513 | ||||||| ||| | || ||| || | |||||||| ||||| || || || |||||| Sbjct 1194 TTTTCTTTTCCGGCTCCTTCTGC-GCGCTGTTTTGGCTGAAGAAACGGGGCCTGATGCCC 1136 Query 125514 GGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 || ||||| |||||| || | || || || ||||| ||| | ||| |||||||| Sbjct 1135 GGGCTGACTTTCAGTAATGAACTCATTTCGCGTGACGAAGGCTTGCACACGGACTTTGC 1077 >seq1649 Length=2817 Score = 114 bits (126), Expect = 2e-20 Identities = 284/431 (66%), Gaps = 0/431 (0%) Strand=Plus/Plus Query 70070 GATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGACTGC 70129 || || || || || ||||| || |||||| | |||| ||| || | || | || Sbjct 1922 GACCTCGGTCCTGTCTACGGCTTTCAGTGGCGTCACTTTGGCGCCGACTACACACACCAT 1981 Query 70130 GAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACACTCTCAAG 70189 || | ||||| || ||||| || |||||| | ||||||| |||| || |||||| Sbjct 1982 GATGCCAACTATGACGGACAGGGGGTGGATCAAATCAAGACAATTGTTGAAACGCTCAAG 2041 Query 70190 ACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAA 70249 || ||||| ||| | |||| | | |||||||||| | ||||| | Sbjct 2042 ACAAATCCTGACGATCGCCGGATGCTCTTCACGGCATGGAATCCAAGCGCTTTGCCCAGG 2101 Query 70250 ATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGTACGATGGCAAATTGTCA 70309 ||||| ||||||||||| ||| | || ||||| ||| | | |||| || |||| Sbjct 2102 ATGGCCCTACCACCGTGCCACCTGCTCGCACAGTTCTACGTGAGCAATGGGGAACTGTCG 2161 Query 70310 TGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGC 70369 ||| | |||| ||| | ||||||||||| || || || || |||||||| | Sbjct 2162 TGCATGTTGTACCAGCGCTCATGTGACATGGGCCTTGGCGTCCCGTTCAACATTGCCTCC 2221 Query 70370 TATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCACGAGTTCGTA 70429 || | | ||||| | || || | || || ||| || ||||| || Sbjct 2222 TACGCCCTCTTGACCATTCTCATCGCAAAGGCGACGGGGCTGCGGCCGGGAGAGTTGGTG 2281 Query 70430 CACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAAAGGTGCAACTC 70489 ||||| |||| |||||||||||||| |||||| ||||||| | |||| |||||| Sbjct 2282 CACACTCTTGGTGACGCTCACGTGTACAGCAATCACGTCGAGCCTTGCAAGGAGCAACTG 2341 Query 70490 GAACGGGAGCC 70500 |||| | ||| Sbjct 2342 AAACGTGTGCC 2352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740844718941040