Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20marinkellei_20[genbank_20GCA_5F000300495.1_202 012-10-01] 23,154 sequences; 34,226,154 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq5537 111 2e-19 >seq5537 Length=6528 Score = 111 bits (122), Expect = 2e-19 Identities = 304/463 (66%), Gaps = 2/463 (0%) Strand=Plus/Minus Query 63188 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 63247 |||||||| ||||| ||| | |||||| || | ||| ||||| |||||||||||||| Sbjct 4688 CATCAACGTCCACTTTCCTCCGCTCTTCACACGCTCCATGAAGAGGTCAGGAATCCAAAG 4629 Query 63248 AGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 63307 ||| ||| | ||||| | || || || || || || ||||| || || | | || Sbjct 4628 AGCGTAAAACAAATCTCGCGCCCTCTGGTCTTCCTTACCGGTATTTTTCTTCAAAAGAAG 4569 Query 63308 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTT 63367 || | |||||| |||||| || || ||||| ||||| | | || ||||| Sbjct 4568 AAAATTAAAGATATCACCATGCCAAGGCTCTAAGTAGATGGCAAAGGCGCCTTTACGTTT 4509 Query 63368 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 63427 | || || || |||| || | || |||||||| |||| | | ||| || | || Sbjct 4508 GCCACCGCCTTGGTCTACATAGCGTGCCGTGTTATTCCAAACACGTAGCATCGGTACAAG 4449 Query 63428 ACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATT-ACTAA 63486 |||||||| ||||| || || | || ||||||||| || ||||| | Sbjct 4448 TCCGTTTGACTGGCCATTTGTCCCAGCAATGTAGCTTCCAGAACAGCGGATATTGTGCAC 4389 Query 63487 TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCAT 63546 ||| | || || || || || |||| || | || ||| | || || || |||| Sbjct 4388 ATGA-ACGCCAATACCACCAGCGGATTTACTTATAACGGCACATTGCTTCAATGTATCAT 4330 Query 63547 AGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGAC 63606 | || ||||| || || || || |||| || |||||||| | |||||| || Sbjct 4329 AAATCCCCTCAATACTGTCCTCACGCATGGCAACAAGAAAACAAGAACTCATTTGAGGAA 4270 Query 63607 GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 63649 | ||||| || || ||||| || || | || || ||||| Sbjct 4269 AAGGCGTTCCGGCGTTGAATAATGTCGGTGTGGCATGTGTAAA 4227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622766903506640