Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20marinkellei_20[genbank_20GCA_5F000300495.1_202 012-10-01] 23,154 sequences; 34,226,154 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq11292 116 1e-20 seq16816 86.0 2e-11 >seq11292 Length=3062 Score = 116 bits (128), Expect = 1e-20 Identities = 349/534 (65%), Gaps = 6/534 (1%) Strand=Plus/Minus Query 22420 ACCATTCAATCAATTAAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGT 22479 || |||| || ||| |||| ||||| | |||||| | ||||| || || Sbjct 1297 ACAATTCCATGCATTCAGAAAAAGGCCAACTGGGCGATTCGGTGGATCCGCAGCAGCAGT 1238 Query 22480 TCATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCA 22539 || || || ||||||||| |||| ||||| | ||| ||||| ||||||||||| || | Sbjct 1237 TCGTTTGCCGAACGTCTTGTTGCCTTTGCGGCGGTGGAAGGTATTTTCTTTTCCGGCTCC 1178 Query 22540 TTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCA--A 22597 || || || | |||||||| || ||||| | | ||||| || || || ||||| | Sbjct 1177 TTCTGCGCGCTGTTTTGGCTGAAGAAACGGGGCCTGATGCCCGGGCTGAC--TTTCAGTA 1120 Query 22598 ATGAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGA 22657 |||| | ||| || || || || | || || || |||||||| || | || || | Sbjct 1119 ATGAACTCATTTCGCGTGACGAAGGCTTGCACACGGACTTTGCGTGCCTGTTGTA-CGAA 1061 Query 22658 ATC-ATATCATTCATAAACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTT 22716 | | | || | | || || ||| | || | | | ||||||||| | ||| || Sbjct 1060 AACTACATTGTGAACAAGCTACCAAAGGAGCGTATTCGCGATATTATTTGCAGTGCGGTG 1001 Query 22717 GAACTTGAACGTCTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCC 22776 || |||| ||| || || || || || | || || | | | || || || || Sbjct 1000 GATATTGAGCGTGAGTTCATCTGTGACGCCATCCCTGTGCGGTTGCTGGGGATGAACGCG 941 Query 22777 GAATCAATGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTAT 22836 || ||| || || || | ||||| ||||| || || || | |||| || || Sbjct 940 GACCTGATGTCAACGTACATCGAGTTTGTGGCAGACCGACTGTTGTTGGCACTTGGCAAT 881 Query 22837 GCAAAGCATTATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGA 22896 | || || ||| || ||||| || | |||||| | || ||| | | ||| Sbjct 880 GAGCGTCACTACAACTCAAAGAACCCATTCGACTTTATGGAAATGATCTCATTGCAGGGA 821 Query 22897 AAGACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATG 22950 ||||| || ||||| ||||| | || |||||||| ||||| ||||| || ||| Sbjct 820 AAGACAAACTTCTTTGAAAAGAAGGTCGGTGAATATCAAAAGGCAGGCGTGATG 767 >seq16816 Length=1011 Score = 86.0 bits (94), Expect = 2e-11 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 78552 AATAAAGATACATCAGTGAATGAACAAAATAATTCATAGTTGCGAACCAGATACCACTAC 78611 |||||| ||||| | ||||| || | ||||||||||| || ||||| | |||||| Sbjct 241 AATAAAAGTACATGATGGAATGGACGCAGTAATTCATAGTGGCAAACCACAATCCACTAG 300 Query 78612 CAATGCAAACGGAATATGCATGCCAACAATAAAGAAGAACCGTTAGATGATGATACCAAT 78671 ||| | |||||||||||||||| | | | || || |||||||||||||| Sbjct 301 AGATGGTGTATGCATATGCATGCCAACAAAACAACATCACTGTGGCATGATGATACCAAT 360 Query 78672 GAAGGAAAATTACTGGATTCTTACGAATCAGGAGAAAGAATGTATCTACAAGTTCAACAA 78731 | | ||||| ||||| ||||| ||| | ||||||| || || | | || || Sbjct 361 GTAAAAAAATCACTGGTTTCTTCTGAAAGACAAGAAAGACCGTGTCGATCATCTCTGGAA 420 Query 78732 TCTTGGAATAAATAAAG 78748 |||| ||| || |||| Sbjct 421 TCTTAGAAAGAACAAAG 437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302966946306428