Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20marinkellei_20[genbank_20GCA_5F000300495.1_202 012-10-01] 23,154 sequences; 34,226,154 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq5537 125 9e-24 seq11292 109 7e-19 >seq5537 Length=6528 Score = 125 bits (138), Expect = 9e-24 Identities = 495/768 (64%), Gaps = 18/768 (2%) Strand=Plus/Minus Query 62746 TGCAACAGATGCCAGATTACAAACGGCTACCTCAT--TAGCATCCGCATATTGTATTATC 62803 ||||| || || || || || || || ||||||| | || | ||| | ||| ||| Sbjct 4985 TGCAATGGAGGCGAGGTTGCACACCGCAACCTCATCCTTTGAT--GTATACTCTATAATC 4928 Query 62804 TCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTA 62863 || |||||||| || ||||||||| ||| | ||| | ||||| || |||| Sbjct 4927 TCCGTGCAAAGGTTCGAGCACTTGATGACTCCAATATTCTTCTGATTTGATTTACGGTTA 4868 Query 62864 CACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCT 62923 || |||||||| ||||| ||||| || || ||||| ||||| ||||| | || || Sbjct 4867 CATGCATCCTTGTAAAGCATGAAAGGGACGCCCGTTTCCATCTGCGATTCGAGTATAGCA 4808 Query 62924 TTCCAGACGACTCGAGCCTTTATTATAGATTT---GTATCTCTTTTCTCTTTCGTATAGT 62980 ||| | | | |||| | | || || | || ||||| |||||||| Sbjct 4807 AACCACAGGGATTGAGCTTGCAC---AGTCTTCACGCCTCGATTTTCCCTTTCGTACCCC 4751 Query 62981 --GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTC-CAGTCCAGGACATTCATCC 63037 ||||| || | || || || || | || | | |||||| || || | Sbjct 4750 TCGTATAACTTCTTA--AAATCATCACCGTAG-CAGTCACTCAGTCCTGGCGCCGTATGC 4694 Query 63038 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63097 || |||||||| ||||| ||| | |||||| || | ||| ||||| ||||||||| Sbjct 4693 GGGTCCATCAACGTCCACTTTCCTCCGCTCTTCACACGCTCCATGAAGAGGTCAGGAATC 4634 Query 63098 CAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 63157 |||||||| ||| | ||||| | || || || || || || ||||| || || | | Sbjct 4633 CAAAGAGCGTAAAACAAATCTCGCGCCCTCTGGTCTTCCTTACCGGTATTTTTCTTCAAA 4574 Query 63158 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63217 || || | |||||| |||||| || || ||||| ||||| | | || Sbjct 4573 AGAAGAAAATTAAAGATATCACCATGCCAAGGCTCTAAGTAGATGGCAAAGGCGCCTTTA 4514 Query 63218 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 63277 |||||| || || || |||| || | || |||||||| |||| | | ||| || Sbjct 4513 CGTTTGCCACCGCCTTGGTCTACATAGCGTGCCGTGTTATTCCAAACACGTAGCATCGGT 4454 Query 63278 ATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATT- 63336 | || || || || ||||| ||||| | || ||||||||| || ||||| Sbjct 4453 ACAAGTCCGTTTGACTGGCCATTTGTCCCAGCAATGTAGCTTCCAGAACAGCGGATATTG 4394 Query 63337 ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 63396 | ||| | || || || || || |||| || | || ||| | || || || Sbjct 4393 TGCACATGA-ACGCCAATACCACCAGCGGATTTACTTATAACGGCACATTGCTTCAATGT 4335 Query 63397 ATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTG 63456 |||||| || ||||| ||||| || || |||| || |||||||| | |||||| Sbjct 4334 ATCATAAATCCCCTCAATACTGTCCTCACGCATGGCAACAAGAAAACAAGAACTCATTTG 4275 Query 63457 GTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAA 63504 || | ||||| || || ||||| || || | || || ||||| Sbjct 4274 AGGAAAAGGCGTTCCGGCGTTGAATAATGTCGGTGTGGCATGTGTAAA 4227 >seq11292 Length=3062 Score = 109 bits (120), Expect = 7e-19 Identities = 269/398 (68%), Gaps = 10/398 (3%) Strand=Plus/Plus Query 32712 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCC 32770 || || || |||||||| ||||| || || || |||||||| | | |||| || || || Sbjct 1125 AAAGTCAGCCCGGGCATCAGGCCCCGTTTCTTCAGCCAAAACAGCG-CGCAGAAGGAGCC 1183 Query 32771 AGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GC 32829 ||||||||||| ||||| || ||||||||||||| ||| | || || ||| | || Sbjct 1184 GGAAAAGAAAATACCTTCCACCGCCGCAAAGGCAACAAGACGTTCGGCA-AACGAACTGC 1242 Query 32830 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 32889 || | |||||| ||||| | |||||| || | | || || ||||| | Sbjct 1243 TGCTGCGGATCCACCGAATCGCCCAGTTGGCCTTTTTCTGAATGCATGGAATTGTTGAAA 1302 Query 32890 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAA--G 32947 | || | | | | || || || | ||| ||| || | || | || | | Sbjct 1303 TGGCGTGCAGCATACGGTCCTTCTCCGTCGGATCCGTAATGTACATGTCCAACAGCACCG 1362 Query 32948 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGC 33007 | ||| |||||||||| | ||| |||||||| || || || ||||||||||| | | Sbjct 1363 AGTATG--TTTCCGAATGTACGTTCTCAATGGCAATCTGGAACCCGTAGAAGCAACGCAC 1420 Query 33008 CT-CGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGT 33066 || ||||| | |||||||| || || || | || | || || ||| ||||| | Sbjct 1421 CTCCGGTACT-TGTACTTCCGTCATGAACCGCTGCGCCAGGTTCTCCAGCACAATTCCAT 1479 Query 33067 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 33104 |||| || ||||| ||||||| || || || |||||| Sbjct 1480 CACTTGCAGCAAAGAACGCCAGCACGTGCTTGATAAAA 1517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633448611058400