Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20marinkellei_20[genbank_20GCA_5F000300495.1_202 012-10-01] 23,154 sequences; 34,226,154 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq11292 187 3e-42 seq9181 87.8 2e-12 >seq11292 Length=3062 Score = 187 bits (206), Expect = 3e-42 Identities = 599/905 (66%), Gaps = 32/905 (4%) Strand=Plus/Plus Query 92803 TTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAA 92862 ||||| ||||| || || || ||||||||||| ||||||||||| | ||| || ||| | Sbjct 780 TTTTGATATTCACCGACCTTCTTTTCAAAGAAGTTTGTCTTTCCCTGCAATGAGATC-AT 838 Query 92863 TTCACTA--GT-GATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAACT-CGTACA 92918 ||| || || || ||| ||||| | ||| || | ||| | ||| | | ||| Sbjct 839 TTCCATAAAGTCGAATGGGTTCTTTGAGTTGTAGTGACGCTCATTGC-CAAGTGCCAACA 897 Query 92919 ATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAA 92978 | | || || || ||||| || |||||| ||||||| || ||||| || || | Sbjct 898 ACAGTCGGTCTGCCACAAACTCGATGTACGTTGACATCAGGTCCGCGTTCATCCCCAGCA 957 Query 92979 GACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGC--TTCTTTCAA 93036 || ||||| | ||||| | ||| || ||| || | || || | | || Sbjct 958 ACCGCACAGGGATGGCGTCACAGATGAACTCACGCTCAATATCCACCGCACTGCAAATAA 1017 Query 93037 GATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATT---GTACATTAAGCA 93093 || | | ||| || || ||||| | || | || | || || ||||| | ||| Sbjct 1018 TATCGCGAATACGCTCCT--TTGGTAGCTTGTTCACAATGTAGTTTTCGTACAACAGGCA 1075 Query 93094 CGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACC 93153 ||||||||| || || || |||||||| || || || | ||||| ||||| || | || Sbjct 1076 CGCAAAGTCCGTGTGCAAGCCTTCGTCACGCGAAATGAGTTCATTACTGAAAGTCAGCCC 1135 Query 93154 TGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTA-CCAGaaaaaaaTA 93212 || | ||| || |||||||| |||||||| | | ||| || | || ||||| || | Sbjct 1136 GGGCATCAGGCCCCGTTTCTTCAGCCAAAACAGCG-CGCAGAAGGAGCCGGAAAAGAAAA 1194 Query 93213 TACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAA--ATTTGCGGAATTACTGCT 93270 |||||||||| || ||||| || |||| |||||||||||| | ||| | |||| Sbjct 1195 TACCTTCCACCGCCGCAAAGGCAACAAGACGTTCGGCAAACGAACTGC-----TGCTGCG 1249 Query 93271 GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTT 93330 |||||| | ||||| | ||| ||||||| ||| || || | |||| || |||| Sbjct 1250 GATCCACCGAATCGCCCAGTTGGCCTTTTTCTGAATGCATGGAATTGTTGAAATGGCGTG 1309 Query 93331 AA--ATA-GGTAATCTCGCTCGTCCGAATCTCGT-ATGTATGTATCGATTAACAGAGAAT 93386 | ||| ||| | || | ||| || ||| ||| ||||| | || | | || || | Sbjct 1310 CAGCATACGGTCCT-TCTC-CGT-CGGATC-CGTAATGTACATGTCCAACAGCACCGAGT 1365 Query 93387 ACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCG 93446 | |||| ||||| || ||||| || ||||| ||||| |||||||| || | | |||| Sbjct 1366 ATGTTTCCGAATGTACGTTCTCAATGGCAATCTGGAACCCGTAGAAGCAACGCACCTCCG 1425 Query 93447 TGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATG 93506 | || ||||| || | || | || || || || || ||||| || Sbjct 1426 GTACTTGTACTTCCGTCATGAACCGCTGCGCCAGGTTCTCCAGCACAATTCCATCACTTG 1485 Query 93507 CTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCC 93566 | ||||| || |||| | ||||| |||||| |||| | || | | ||| |||| Sbjct 1486 CAGCAAAGAACGCCAGCACGTGCTTGATAAAAAACCTCTCCCCCTCGCTCATCTTTTCCC 1545 Query 93567 AATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGC-TTCTGCT 93625 | || | | || | | |||| ||| || || |||| | | | ||| ||| || Sbjct 1546 AGTCCGCCAAGTCACTGCTCAAGTCGATTTCCTCCACCGTCC-AGATGCTGCTTTCGGCC 1604 Query 93626 TTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGG 93685 | |||||| | | ||| || || || |||| ||| ||||| || || |||| | ||| Sbjct 1605 TCCTTGTACTTCTTCCAGATATCGTGGTATTTAATCGGAAAGATCACGTAACGGTCAGGA 1664 Query 93686 TTATC 93690 || || Sbjct 1665 TTCTC 1669 >seq9181 Length=917 Score = 87.8 bits (96), Expect = 2e-12 Identities = 61/67 (91%), Gaps = 2/67 (3%) Strand=Plus/Minus Query 126273 TGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGGTTCGA 126332 ||||||||||||||||||||||||||||| | ||||| || || ||| |||||||||||| Sbjct 493 TGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGG-TCTCTAGGG-GCGTGGGTTCGA 436 Query 126333 ACCCCAC 126339 ||||||| Sbjct 435 ACCCCAC 429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556699630562960