Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20marinkellei_20[genbank_20GCA_5F000300495.1_202 012-10-01] 23,154 sequences; 34,226,154 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq5537 111 1e-19 seq11306 102 7e-17 seq14056 95.1 1e-14 seq11307 82.4 6e-11 >seq5537 Length=6528 Score = 111 bits (122), Expect = 1e-19 Identities = 309/467 (66%), Gaps = 8/467 (2%) Strand=Plus/Minus Query 128782 TCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACATGCCTGTT 128841 |||||||| ||||| || || ||||| ||||| ||| | || || || |||||||| || Sbjct 5899 TCCACGGTGAATTTGATTGCATCCGCAGCCGGTTTGCTCCGTAAGTAATACATGCCCGTC 5840 Query 128842 TTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGC--GTAGGTGGGTT 128899 || | || | || ||| | | ||| || | |||| | || | || ||| || Sbjct 5839 TTGAGGCCACGTTCCCAGGCAAAAAAGTGCATAGATGTCAGCTG-GCTGGAAGTTGGATT 5781 Query 128900 GACTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAGCCA 128959 | |||||| | ||| || |||||| || ||||| || ||| || || |||||| Sbjct 5780 TTC-CAAAAACAGATTCAAGCTTTGACTCTGGTCAATGAACTTGCCACGGTCCACAGCCA 5722 Query 128960 TACCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGTGTT 129019 | |||| | || ||| ||||||||||| || | ||| | | || | Sbjct 5721 TCTCAATAAGATCCTTCTGCCGAATTTCCCACACAACACGATACAACTCCTTGAGGTCAT 5662 Query 129020 TTGGTATTTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAATAATTTTGTTTCGCATCT 129079 |||| || | | |||||| || || ||| |||| |||||||| | ||| ||||||| Sbjct 5661 TTGGAATGCCCTTAATGTTTTGTACCGAGCCATTGTAGGCAATAATCTGGTTGCGCATCT 5602 Query 129080 GTTCGTTGTACAAATTCAGTTTGATCAAAT-CGTCGGTCAA-GTATTTGTTTATTACTTG 129137 |||||| ||| | | | || || | || | || ||| ||| ||||| | || | Sbjct 5601 CTTCGTTCCACAGACCCCGCTTAATAAGATCCATC--ACAAGGTACTTGTTAACCACAGG 5544 Query 129138 AAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACGATTC 129197 ||| ||||| || || || || ||||| || || ||| || || ||||| | || Sbjct 5543 AAACTCACCACTCAGCACTCGGCGCACGTAGATATTTGAGGTAAATGGTTCAAAGCACTC 5484 Query 129198 ATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCA 129244 |||||| || | ||| || | || | || |||||||| ||||| Sbjct 5483 ATTGTTCCCAAGTATCTGCGAAGTGGATGCAGTGGGCATTGGAGCCA 5437 >seq11306 Length=946 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| || || | || || || ||| || | || || ||||| | | | Sbjct 728 ATGCAAATTTTTGTGAAGACACTGACGGGCAAGACGATCGCGCTCGAGGTGGAGTCTAGC 669 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | | || || || || ||||||||||| ||||| || || || Sbjct 668 GATACCATTGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCAG 609 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| ||| | ||||| ||||| || | || |||||| Sbjct 608 CAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGTCGCACGCTCGCAGACTACAAC 549 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTT 22449 || || || || ||||| | || | || |||| ||||||| ||| || Sbjct 548 ATCCAGAAGGAGTCCACGCTGCACCTTGTGCTGCGCCTGCGCGGTGGTATT 498 >seq14056 Length=822 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || ||| | | || || ||||| ||| | Sbjct 463 ATGCAGATCTTCGTGAAGACACTGACGGGCAAGACGATTGCACTCGAGGTGGAGTCCAGC 522 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | | || || || || ||||||||||| ||||| || || || Sbjct 523 GATACCATTGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCAG 582 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| ||| | |||||| |||||| || | || |||||| Sbjct 583 CAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACGCTCGCAGACTACAAC 642 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || ||||| | || | || |||| ||||||| || Sbjct 643 ATCCAGAAGGAGTCCACGCTGCACCTTGTGCTGCGCCTGCGCGGTGG 689 >seq11307 Length=654 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || ||| || | || || ||||| ||| | Sbjct 617 ATGCAGATCTTCGTGAAGACACTGACGGGCAAGACGATCGCGCTCGAGGTGGAGTCCAGC 558 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || || || ||||||||||| ||||| || || || Sbjct 557 GACACCATTGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCAG 498 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| ||| | ||||| ||||| || | || |||||| Sbjct 497 CAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGTCGCACGCTCGCAGACTACAAC 438 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || ||||| | || | || |||| |||| || ||| Sbjct 437 ATCCAGAAGGAGTCCACGCTGCACCTTGTGCTGCGCCTGCGTGGCGGT 390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419609557218010