Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20marinkellei_20[genbank_20GCA_5F000300495.1_202 012-10-01] 23,154 sequences; 34,226,154 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq14056 152 9e-32 seq11307 152 9e-32 seq11306 143 5e-29 seq10799 138 2e-27 seq19605 87.8 3e-12 >seq14056 Length=822 Score = 152 bits (168), Expect = 9e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||||| || | ||| ||||||||||| || |||||||| || || | | Sbjct 689 CCACCGCGCAGGCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCG 630 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| || || | || ||||| || ||| Sbjct 629 AGCGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGA 570 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 ||||| |||||||| || ||||| ||||| ||| ||| ||||| || ||| || || || Sbjct 569 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCAATGGTATC-GCTGGACTCCAC 511 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | | || || || ||||| || ||||| ||||| |||||||| Sbjct 510 CTCGAGTGCAATCGTCTTGCCCGTCAGTGTCTTCACGAAGATCTGCAT 463 >seq11307 Length=654 Score = 152 bits (168), Expect = 9e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| || | ||| ||||||||||| || |||||||| || || | | Sbjct 391 CCGCCACGCAGGCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCG 450 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || ||||| || || | || ||||| || ||| Sbjct 451 AGCGTGCGACCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGA 510 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 ||||| |||||||| || ||||| ||||| ||| ||| |||||||| ||| || || || Sbjct 511 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCAATGGTGTC-GCTGGACTCCAC 569 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | | ||| || || ||||| || ||||| ||||| |||||||| Sbjct 570 CTCGAGCGCGATCGTCTTGCCCGTCAGTGTCTTCACGAAGATCTGCAT 617 >seq11306 Length=946 Score = 143 bits (158), Expect = 5e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||||| || | ||| ||||||||||| || |||||||| || || | | Sbjct 502 CCACCGCGCAGGCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCG 561 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || ||||| || || | || ||||| || ||| Sbjct 562 AGCGTGCGACCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGA 621 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 ||||| |||||||| || ||||| ||||| ||| ||| ||||| || ||| || || || Sbjct 622 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCAATGGTATC-GCTAGACTCCAC 680 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | | ||| || || ||||| || ||||| || || || ||||| Sbjct 681 CTCGAGCGCGATCGTCTTGCCCGTCAGTGTCTTCACAAAAATTTGCAT 728 >seq10799 Length=11388 Score = 138 bits (152), Expect = 2e-27 Identities = 240/347 (69%), Gaps = 4/347 (1%) Strand=Plus/Plus Query 268246 CTGGAGCATTTTCCACATTGCTTCGACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGC 268305 ||| ||||| |||||| | | ||||||||| ||| || ||||| || ||| || Sbjct 7451 CTGCAGCATGAGCCACATGCCGTACACATAGTCCTTCGCGTGCCCCCAGTCACGCAGGGC 7510 Query 268306 GTCCATGTTCCCGAGGAACAGGCATTTCTGCTTGCCGAGCTTCACGCGTGCA--AGACCG 268363 | || ||| || || | ||| |||||| ||| ||| | ||| | || ||| Sbjct 7511 ATTCACGTTGCCAAGAAGCAGCTCCTTCTGCAGGCCCTTCTTGATGCGCACCGCAGCCCG 7570 Query 268364 CGAGTGATTTTTCGGGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGG 268423 | || |||| |||| |||||| |||| ||| | || ||||||||| || || Sbjct 7571 CACAATCTTCTTCG--TCACAAACGTCGCGCCGCGTCGTGGCGACTCGTGGTTAAATAGA 7628 Query 268424 ATGCCGTTGCACGCGAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCA 268483 |||||||||||||| ||||| || || | ||||||||||||||| |||| | || Sbjct 7629 ATGCCGTTGCACGCAAACATACCGTACGACTCACGGTAGTTCACTGTGATCCAAAAGGCG 7688 Query 268484 AACATCTTTGCAACTGCGTACGGAGAACGTGGATGGAAGGGCGTCGTGATCTTTTGAGGG 268543 ||| |||||| || |||||||| || || |||||||||||| | | | || || Sbjct 7689 TACAGCTTTGCCACCGCGTACGGGCTGCGCGGGTGGAAGGGCGTCTTCTCCGTCTGCGGC 7748 Query 268544 ATTTCTCGGACTTTGCCAAAGAGCTCGGAGGTCGATGCTTGGTAGAA 268590 | || | || |||||| |||||||| ||| ||| |||||||| Sbjct 7749 ACCTCCTGCACCTTGCCATAGAGCTCGCTGGTGCTTGCCTGGTAGAA 7795 >seq19605 Length=5274 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 1280 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGATCCCCAC 1337 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 2513 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGATCCCCAC 2570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921355659436880