Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20marinkellei_20[genbank_20GCA_5F000300495.1_202 012-10-01] 23,154 sequences; 34,226,154 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq11292 190 4e-43 seq5537 89.7 1e-12 >seq11292 Length=3062 Score = 190 bits (210), Expect = 4e-43 Identities = 559/845 (66%), Gaps = 21/845 (2%) Strand=Plus/Minus Query 42292 ACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGA 42351 |||| || |||||| | ||||||| |||| | | || |||||| | ||||| | Sbjct 1632 ACCACGATATCTGGAAGAAGTACAAGGAGGCCGAAAGCAGCATCTGGACGGTGGAGGAAA 1573 Query 42352 TTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAGTTTTTCC 42411 | ||| || || ||| ||| | |||||| || ||| || | |||||| Sbjct 1572 TCGACTTGAGCAGTGACTTGGCGGACTGGGAAAAGATGAGCGAGGGGGAGAGGTTTTTTA 1513 Query 42412 TCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGC-C 42470 |||| || | ||||| ||||| || || ||| || || || ||||||||||| | Sbjct 1512 TCAAGCACGTGCTGGCGTTCTTTGCTGCAAGTGATGGAATTGTGCTGGAGAACCTGGCGC 1453 Query 42471 ACCAGGTTCATGAAAGAGGTGCA-GTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGAT 42529 | | ||||||||| || || || |||| |||| ||| ||||||||||| |||||||| Sbjct 1452 AGC-GGTTCATGACGGAAGTACAAGTACCG-GAGGTGCGTTGCTTCTACGGGTTCCAGAT 1395 Query 42530 AGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGA 42589 ||||| |||||||| || || || ||| | ||| | ||| |||||| ||| Sbjct 1394 TGCCATTGAGAACGTACATTCGGAAACATACTCGGTGCTGTTGGACATGTACATTACGGA 1335 Query 42590 TCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAA 42649 ||| ||| || | || | | ||||| || || || ||||| |||| || Sbjct 1334 TCCGACGGAGAAGGACCGTATGCTGCACGCCATTTCAACAATTCCATGCATTCAGAAAAA 1275 Query 42650 GGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGT 42709 ||| |||||||| | |||||| || | | |||| | ||| | || || Sbjct 1274 GGCCAACTGGGCGATTCGGTGGATCCGCAG---CAGCAGTTCGTTTGCCGAACGTCTTGT 1218 Query 42710 AGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCT 42769 |||||| | || || || || || ||||| || ||| ||||| | | | || ||||| Sbjct 1217 TGCCTTTGCGGCGGTGGAAGGTATTTTCTTTTCCGGCTCCTTCTGCGCGCTGTTTTGGCT 1158 Query 42770 CAAGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACG 42828 ||| | | || | | ||||||||| || || ||| || |||||||| | |||| Sbjct 1157 GAAG-AAACGGGGCCTGATGCCCGGGCTGACTTTCAGTAATGAACTCATTTCGCGTGACG 1099 Query 42829 AGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCT 42888 | || |||| | ||||||||| ||||| ||| | | | || | | |||||| Sbjct 1098 AAGGCTTGCACACGGACTTTGCGTGCCTGTTGTACGAAAACTACATTGTGAACAAGCTAC 1039 Query 42889 CGAAGGAGCGGGTCCGGGCCATCATCACGGAG-GCCGTGGAGATCGAGAAGGAGTTCCTC 42947 | |||||||| | || | || || | || || ||||| || ||| |||||| || Sbjct 1038 CAAAGGAGCGTATTCGCGATATTAT-TTGCAGTGCGGTGGATATTGAGCGTGAGTTCATC 980 Query 42948 ----ACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTA 43003 |||| || ||| || || || | || |||||| ||||| |||| | ||| Sbjct 979 TGTGACGCCATCCCTGTGCG-GT---TGCTGGGGATGAACGCGGACCTGATGTCAACGTA 924 Query 43004 CATCCAGTACGTCGCCGACCATCTCCTG-TGCCAGATGGGTCTCAGCCGCCTCTACAACA 43062 |||| ||| || || |||| || || || || ||| | || || | ||||||| Sbjct 923 CATCGAGTTTGTGGCAGACCGACTGTTGTTGGCACTTGGCAATGAG-CGTCACTACAACT 865 Query 43063 CGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCG 43122 | | ||| |||||||||||||| | ||||| ||| |||| ||||| ||||| || | Sbjct 864 CAAAGAACCCATTCGACTTTATGGAAATGATCTCATTGCAGGGAAAGACAAACTTCTTTG 805 Query 43123 AGAAG 43127 | ||| Sbjct 804 AAAAG 800 >seq5537 Length=6528 Score = 89.7 bits (98), Expect = 1e-12 Identities = 146/209 (70%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 243998 ATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGG 244057 ||||| || |||||||| |||| | | || | |||| ||||||| | ||||||||||| Sbjct 5647 ATGTTTTGTACCGAGCCATTGTAGGCAATAATCTGGTTGCGCATCTCTTCGTTCCACAGA 5588 Query 244058 CCCAAGCGCT---CCAGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGAC 244114 ||| |||| || || || |||| | |||| ||||| ||||||| || | Sbjct 5587 CCC---CGCTTAATAAGATCCATCACAAGGTACTTGTTAACCACAGGAAACTCACCACTC 5531 Query 244115 AGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGT 244174 ||||| |||||| ||||| || | | | || || | || ||| |||| || ||| Sbjct 5530 AGCACTCGGCGCACGTAGATATTTGAGGTAAATGGTTCAAAGCACTCATTGTTCCCAAGT 5471 Query 244175 ATCTGCGCCGTGCTCGCAGTCGGCATGGG 244203 ||||||| ||| ||||| ||||| || Sbjct 5470 ATCTGCGAAGTGGATGCAGTGGGCATTGG 5442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944065884627040