Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20marinkellei_20[genbank_20GCA_5F000300495.1_202 012-10-01] 23,154 sequences; 34,226,154 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq11306 113 4e-20 seq11307 102 6e-17 seq14056 95.1 1e-14 >seq11306 Length=946 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| |||||||| || || |||||| ||||||||| |||||||| ||||| Sbjct 501 ACCACCGCGCAGGCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGC 560 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || |||| |||| |||||||| || || |||||||||||||| ||| ||| Sbjct 561 GAGCGTGCGACCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGG 620 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGC 34078 | || ||| |||||| || || ||| | | ||| | |||| |||| || Sbjct 621 AATGCCCTCCTTGTCCTGGATCTTCGCCTTCA-CGTTCTCAATGGTATCGCTAGACTCCA 679 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| || || || || || || ||||| |||||||| |||||||| Sbjct 680 CCTCGAGCGCGATCGTCTTGCCCGTCAGTGTCTTCACAAAAATTTGCAT 728 >seq11307 Length=654 Score = 102 bits (112), Expect = 6e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| |||||||| || || |||||| ||||||||| |||||||| ||||| Sbjct 390 ACCGCCACGCAGGCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGC 449 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || |||| |||| |||||||| || || |||||||||||||| ||| ||| Sbjct 450 GAGCGTGCGACCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGG 509 Query 34020 CACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 510 AATGCCCTCCTTGTCC 525 >seq14056 Length=822 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| |||||||| || || |||||| ||||||||| |||||||| ||||| Sbjct 689 CCACCGCGCAGGCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCG 630 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | || |||| |||||||| || || |||||||||||||| ||| ||| Sbjct 629 AGCGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGA 570 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 569 ATGCCCTCCTTGTCC 555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396950353209508