Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20marinkellei_20[genbank_20GCA_5F000300495.1_202 012-10-01] 23,154 sequences; 34,226,154 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq11306 152 1e-31 seq14056 149 1e-30 seq11307 149 1e-30 >seq11306 Length=946 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | || || || || | |||| || || ||||| || ||||| ||| Sbjct 502 CCACCGCGCAGGCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCG 561 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| ||||| || | || || || ||||||||||| ||||| || || Sbjct 562 AGCGTGCGACCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGA 621 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| ||||| |||||||| || || | |||||| || || || Sbjct 622 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCAATGGTATCGCTAGACTCCACC 681 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||| ||||||||| || ||||| ||||| || || || ||||| Sbjct 682 TCGAGCGCGATCGTCTTGCCCGTCAGTGTCTTCACAAAAATTTGCAT 728 >seq14056 Length=822 Score = 149 bits (164), Expect = 1e-30 Identities = 173/232 (75%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| |||||||| || | || || || || | |||| || || ||||| || |||| Sbjct 693 CATG-CCACCGCGCAGGCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGT 635 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | ||||||||||| || || || | || || || ||||||||||| ||||| || Sbjct 634 CTGCGAGCGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCG 575 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 || || || || || |||||||| ||||| |||||||| || || | |||||| || | Sbjct 574 GCGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCAATGGTATCGCTGGACT 515 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || ||||| | |||||||| || ||||| ||||| ||||| |||||||| Sbjct 514 CCACCTCGAGTGCAATCGTCTTGCCCGTCAGTGTCTTCACGAAGATCTGCAT 463 >seq11307 Length=654 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || || || | |||| || || ||||| || ||||| ||||||||||| ||||| Sbjct 406 AGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGACCGTCC 465 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | || || || ||||||||||| ||||| || || || || || || ||| Sbjct 466 TCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCC 525 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 ||||| ||||| |||||||| || || | ||||| || || || ||||||| ||||||| Sbjct 526 TGGATCTTCGCCTTCACGTTCTCAATGGTGTCGCTGGACTCCACCTCGAGCGCGATCGTC 585 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| ||||| |||||||| Sbjct 586 TTGCCCGTCAGTGTCTTCACGAAGATCTGCAT 617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179304442988412