Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20marinkellei_20[genbank_20GCA_5F000300495.1_202 012-10-01] 23,154 sequences; 34,226,154 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq5537 206 3e-48 seq11292 93.3 5e-14 >seq5537 Length=6528 Score = 206 bits (228), Expect = 3e-48 Identities = 685/1055 (65%), Gaps = 19/1055 (2%) Strand=Plus/Minus Query 113602 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGACAACTT 113661 ||| ||||| ||||||||||| || | | ||||||| | | ||||| || | || || Sbjct 5855 GTAATACATGCCCGTCTTGAGGCCACGTTCCCAGGCAAAAAAGTGCATAGATGTCAGCTG 5796 Query 113662 GGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 113721 | | |||||| |||||| || || |||| ||||| || || ||||| || Sbjct 5795 GCTGGAAGTTGGATTTTCCAAAAACAGATTCAAGCTTTGACTCTGGTCAATGAACTTGCC 5736 Query 113722 ACGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAG 113781 ||| ||| | ||||| ||||| | ||||||| | |||||||||||| | || | Sbjct 5735 ACGGTCCACAGCCATCTCAATAAGATCCTTCTGCCGAATTTCCCACACAACACGATACAA 5676 Query 113782 GTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCCTTGACCAT 113841 | ||| | |||| ||| || || || ||||| | |||||| | | | || Sbjct 5675 CTCCTTGAGGTCATTTGGAATGCCCTTAATGTTTTGTACCGAGCCATTG---TAGGCAAT 5619 Query 113842 GAGATCCTT---CATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATG 113898 | | || ||| || | ||| ||||| ||| | |||||| ||| || | Sbjct 5618 AATCTGGTTGCGCATCTCTTCGTTCCACAGACCCCGCTTAATAAGATCCATCACAAGGTA 5559 Query 113899 CTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTA 113958 ||| || || ||| ||||||||| || || | || |||||||| | || | Sbjct 5558 CTTGTTAACCACAGGAAACTCACCACTCAGCACTCGGCGCACGTAGATATTTGAGGTAAA 5499 Query 113959 TGGCTCAAAGCACTCATTGTTACCCAAG-ATTTGGGCGGTGGAGGCTGTGGGCATGGGTG 114017 ||| ||||||||||||||||| |||||| || || | ||||| || |||||||| || | Sbjct 5498 TGGTTCAAAGCACTCATTGTT-CCCAAGTATCTGCGAAGTGGATGCAGTGGGCATTGGAG 5440 Query 114018 CCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTCCCAGT 114077 ||| || | || || | ||| ||| | | | ||| ||| | |||||||| | Sbjct 5439 CCAATAGTAACGAATTCCGCATACCACTTTTCATGACACGTCTCTTCAATGCGTCCCAAT 5380 Query 114078 CGTAGTTGAG-CTTTGTC--TCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGAGG 114134 | | | ||| || | | || ||||| |||||| || || ||||| || | Sbjct 5379 CCCAACGGCCACTTCGTGGTTTCTGCTCCCACAGATCAAATTGTAGTTGGCCTTGCGATG 5320 Query 114135 CTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCT 114194 | || || |||| | | || || || || || ||||| | ||| ||| |||| Sbjct 5319 CGGGACTGCCTGCAAACCGCGCATAAGGCCCTTCCACTTCCGCGAGTTCCACGCTTGCCT 5260 Query 114195 CGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGG 114254 | | ||| ||| || || || |||||||| |||||| | | ||||| | | Sbjct 5259 CCACGGCACCGTAGTAAATCGTTTCAAAAATATCTTCATTCAAAGTTCTTGCCTCCTGGC 5200 Query 114255 AATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAA 114314 | ||| | || || || ||||| ||||| | ||||| || || | |||| Sbjct 5199 ATGTAAATGGTAGCCGCATCAGGATAAACGTGTCCGCCATTCCTTGTACGCCAATTCCAA 5140 Query 114315 TTGGGCGATGTCTCATATTAGACTTTCGAGCG-GTCTCC---ACGGGATAAAAATTCCTA 114370 | || |||| | || |||| ||| | ||| || |||||| || | | Sbjct 5139 TGGGACGATTAAGCTCGTTGC---TTCG-GCGTGACTCGGGTACAGGATAATGGTTACGA 5084 Query 114371 TCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAA 114430 || || || | ||| |||||||| ||||||| ||| |||| |||| ||| | || | Sbjct 5083 TCAATCACTCGATTAAGATTTTTTGTGACAATCTTCGTGACCTCATACAGCCGCTGGTGA 5024 Query 114431 TCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACAC 114490 ||| | | | |||| | || ||| | ||||| || || || || || || ||| Sbjct 5023 TCATACATTCTTTTCTCCTTATCCACAAAGCGTGGAAGTGCAATGGAGGCGAGGTTGCAC 4964 Query 114491 ACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTA 114550 || | ||||||||| || ||||||||||| ||||| || | || || | ||| Sbjct 4963 ACCGCAACCTCATCCTTTGATGTATACTCTATAATCTCCGTGCAAAGGTTCGAGCACTTG 4904 Query 114551 ATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTAT 114610 ||| || | ||||| |||||||| || |||||| |||||||||||||||||| | Sbjct 4903 ATGACTCCAATATTCTTCTGATTTGATTTACGGTTACATGCATCCTTGTAAAGCATGAAA 4844 Query 114611 GGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGC 114645 || ||||| ||| | || || | ||| ||||| Sbjct 4843 GGGACGCCCGTTTCCATCTGCGATTCGAGTATAGC 4809 >seq11292 Length=3062 Score = 93.3 bits (102), Expect = 5e-14 Identities = 147/209 (70%), Gaps = 5/209 (2%) Strand=Plus/Plus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || ||| | || |||||||| || ||||||||||| ||| ||| || Sbjct 1077 GCAAAGTCCGTGTGCAAGCCTTCGTCACGCGAAATGAGTTCATTACTGAAAGTCAGCCCG 1136 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||| || ||||| ||||||| ||| || | ||| || || || || || ||||| || Sbjct 1137 GGCATCAGGCCCCGTTTCTTCAGCCAAAACAGCGCGCAGAAGGAGCCGGAAAAGAAAATA 1196 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGC-GCGACTTTGTGTCAAA 126225 || ||||| ||| || |||| ||||| || ||||| || | || | || | Sbjct 1197 CCTTCCACCGCCGCAAAGGCAACAAGACGTTCGGCAAACGAACTGC----TGCTGCGGAT 1252 Query 126226 CCACTTCATCGCCCACTGCGCCTTTTTCT 126254 |||| |||||||| | |||||||||| Sbjct 1253 CCACCGAATCGCCCAGTTGGCCTTTTTCT 1281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597180710934320