Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20marinkellei_20[genbank_20GCA_5F000300495.1_202 012-10-01] 23,154 sequences; 34,226,154 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq11307 96.9 3e-15 seq11306 96.9 3e-15 seq11292 86.0 6e-12 seq14056 82.4 8e-11 >seq11307 Length=654 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| |||| |||| || | || | | |||||||| || ||||||||||| Sbjct 391 CCGCCACGCAGGCGCAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCTGCG 450 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||| || || || || | |||| || ||||| |||||||| || Sbjct 451 AGCGTGCGACCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGCGGA 510 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || || | | || | ||||||| | ||||||||| Sbjct 511 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCAATGGTGTCGCTGGACTCCACC 570 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||| || | ||| || || ||||| || || || || ||||||||| Sbjct 571 TCGAGCGCGATCGTCTTGCCCGTCAGTGTCTTCACGAAGATCTGCATG 618 >seq11306 Length=946 Score = 96.9 bits (106), Expect = 3e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | || || |||||| || || || || | Sbjct 535 GACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGACCGTCCTCCAGCTGCTTGCCAGCG 594 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| |||||||| || || || || ||||| ||| || || | Sbjct 595 AAGATCAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACG 654 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||| ||| | ||||||||||||| || | ||| || || ||||| || || Sbjct 655 TTCTCAATGGTATCGCTAGACTCCACCTCGAGCGCGATCGTCTTGCCCGTCAGTGTCTTC 714 Query 138601 ACAAAAATCTGCATGG 138616 |||||||| ||||||| Sbjct 715 ACAAAAATTTGCATGG 730 >seq11292 Length=3062 Score = 86.0 bits (94), Expect = 6e-12 Identities = 156/226 (69%), Gaps = 7/226 (3%) Strand=Plus/Minus Query 52329 CCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCCACG 52388 || ||| ||| |||||||| | ||||| || ||||||| ||| || | | Sbjct 1291 CCATGCATTCAGAAAAAGGCCAACTGGGCGATTCGGTGGATCCGCAGCAGCAGTTC---G 1235 Query 52389 CTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTT 52448 | ||||| || | || ||||| || || || || | || ||||||||| ||| Sbjct 1234 TTTGCCGAACGTCTTGTTGCCTTTGCGGCGGTGGAAGGTATTTTCTTTTCCGGCTCCTTC 1175 Query 52449 GCCGCCATCTTTTACATTAA--AACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACG 52506 ||| | |||| | || |||| ||| | |||||||| ||||| ||||| || | Sbjct 1174 TGCGCGCTGTTTTGGCTGAAGAAACGG--GGCCTGATGCCCGGGCTGACTTTCAGTAATG 1117 Query 52507 AGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT 52552 | | || ||||| |||||||| |||||||||||||||||||||| Sbjct 1116 AACTCATTTCGCGTGACGAAGGCTTGCACACGGACTTTGCGTGCCT 1071 >seq14056 Length=822 Score = 82.4 bits (90), Expect = 8e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | || || ||||| || || || || | Sbjct 656 GACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGGCCATCCTCCAGCTGCTTGCCAGCG 597 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| |||||||| || || || || ||||| ||| || || | Sbjct 596 AAGATCAGGCGCTGCTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACG 537 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||| ||| | ||||||||||||| | | ||| || || ||||| || || Sbjct 536 TTCTCAATGGTATCGCTGGACTCCACCTCGAGTGCAATCGTCTTGCCCGTCAGTGTCTTC 477 Query 138601 ACAAAAATCTGCATG 138615 || || ||||||||| Sbjct 476 ACGAAGATCTGCATG 462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496118769254880