Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20marinkellei_20[genbank_20GCA_5F000300495.1_202 012-10-01] 23,154 sequences; 34,226,154 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq5537 194 2e-44 seq11292 107 2e-18 >seq5537 Length=6528 Score = 194 bits (214), Expect = 2e-44 Identities = 683/1055 (65%), Gaps = 19/1055 (2%) Strand=Plus/Minus Query 115563 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 115622 ||| ||||| ||||||||||| || | | ||||||| | | ||||| || | || || Sbjct 5855 GTAATACATGCCCGTCTTGAGGCCACGTTCCCAGGCAAAAAAGTGCATAGATGTCAGCTG 5796 Query 115623 GGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 115682 | | |||||| |||||| || || |||| ||||| || || ||||| || Sbjct 5795 GCTGGAAGTTGGATTTTCCAAAAACAGATTCAAGCTTTGACTCTGGTCAATGAACTTGCC 5736 Query 115683 CCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAG 115742 || ||| | ||||| ||||| | ||||||| | |||||||||||| | || | Sbjct 5735 ACGGTCCACAGCCATCTCAATAAGATCCTTCTGCCGAATTTCCCACACAACACGATACAA 5676 Query 115743 GTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCAT 115802 | ||| | |||| ||| || || || ||||| | |||||| || | | | || Sbjct 5675 CTCCTTGAGGTCATTTGGAATGCCCTTAATGTTTTGTACCGAGCCAT-TG--TAGGCAAT 5619 Query 115803 GAGATCCTT---CATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTG 115859 | | || ||| || | ||| ||||| ||| | |||||| ||| |||| Sbjct 5618 AATCTGGTTGCGCATCTCTTCGTTCCACAGACCCCGCTTAATAAGATCCATCACAAGGTA 5559 Query 115860 CTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTA 115919 ||| || || ||| ||||||||| || || | || ||||| || | || | Sbjct 5558 CTTGTTAACCACAGGAAACTCACCACTCAGCACTCGGCGCACGTAGATATTTGAGGTAAA 5499 Query 115920 TGGCTCAAAGCACTCATTGTTACCCAAG-ATTTGGGCTGTGGAGGCTGTGGGCATGGGTG 115978 ||| ||||||||||||||||| |||||| || || | ||||| || |||||||| || | Sbjct 5498 TGGTTCAAAGCACTCATTGTT-CCCAAGTATCTGCGAAGTGGATGCAGTGGGCATTGGAG 5440 Query 115979 CCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGT 116038 ||| || | || || | ||| | | | ||| ||| | |||||||| | Sbjct 5439 CCAATAGTAACGAATTCCGCATACCACTTTTCATGACACGTCTCTTCAATGCGTCCCAAT 5380 Query 116039 CGTAGTTGAG-CTTTGTC--TCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACG 116095 | | | ||| || | | |||||||| |||||| || || ||||| || | Sbjct 5379 CCCAACGGCCACTTCGTGGTTTCTGCTCCCACAGATCAAATTGTAGTTGGCCTTGCGATG 5320 Query 116096 CTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCT 116155 | || || |||| | |||| || || || || ||||| | ||| ||| |||| Sbjct 5319 CGGGACTGCCTGCAAACCGCGCATAAGGCCCTTCCACTTCCGCGAGTTCCACGCTTGCCT 5260 Query 116156 CGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGG 116215 | | ||| ||| || || || |||||||| |||||| | | ||||| | | Sbjct 5259 CCACGGCACCGTAGTAAATCGTTTCAAAAATATCTTCATTCAAAGTTCTTGCCTCCTGGC 5200 Query 116216 AATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAA 116275 | ||| | || || || ||||| ||||| | ||||| || || | |||| Sbjct 5199 ATGTAAATGGTAGCCGCATCAGGATAAACGTGTCCGCCATTCCTTGTACGCCAATTCCAA 5140 Query 116276 TTGGGCGATGTCTCATATTAGACTTTCGAGCG-GTCTCC---ACGGGATAAAAATTCCTA 116331 | || |||| | || |||| ||| | ||| || |||||| || | | Sbjct 5139 TGGGACGATTAAGCTCGTTGC---TTCG-GCGTGACTCGGGTACAGGATAATGGTTACGA 5084 Query 116332 TCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAA 116391 || || || | ||| |||||||| ||||||| ||| |||| |||| ||| | || | Sbjct 5083 TCAATCACTCGATTAAGATTTTTTGTGACAATCTTCGTGACCTCATACAGCCGCTGGTGA 5024 Query 116392 TCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACAC 116451 ||| | | | |||| | || ||| | ||||| || || || || || || ||| Sbjct 5023 TCATACATTCTTTTCTCCTTATCCACAAAGCGTGGAAGTGCAATGGAGGCGAGGTTGCAC 4964 Query 116452 ACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTA 116511 || | ||||||||| || ||||||||||| ||||| || | || || | ||| Sbjct 4963 ACCGCAACCTCATCCTTTGATGTATACTCTATAATCTCCGTGCAAAGGTTCGAGCACTTG 4904 Query 116512 ATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATAT 116571 ||| || | ||||| |||||||| || |||||| ||||||||||| ||||| | Sbjct 4903 ATGACTCCAATATTCTTCTGATTTGATTTACGGTTACATGCATCCTTGTAAAGCATGAAA 4844 Query 116572 GGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGC 116606 || ||||| ||| | || || | ||| ||||| Sbjct 4843 GGGACGCCCGTTTCCATCTGCGATTCGAGTATAGC 4809 >seq11292 Length=3062 Score = 107 bits (118), Expect = 2e-18 Identities = 156/219 (71%), Gaps = 5/219 (2%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| | || |||||||| || ||||||||||| ||| ||| || Sbjct 1077 GCAAAGTCCGTGTGCAAGCCTTCGTCACGCGAAATGAGTTCATTACTGAAAGTCAGCCCG 1136 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||| || ||||| ||||||| ||| || | ||| || || ||||| || ||||| || Sbjct 1137 GGCATCAGGCCCCGTTTCTTCAGCCAAAACAGCGCGCAGAAGGAGCCGGAAAAGAAAATA 1196 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGC-GGGACTTTGTATCAAA 127698 || ||||| ||| || |||| ||||| |||||||| || | | || | || Sbjct 1197 CCTTCCACCGCCGCAAAGGCAACAAGACGTTCGGCAAACGAACTGCTGCTGCGGAT---- 1252 Query 127699 CCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGG 127737 |||| |||||||| | |||||||||| || ||||| Sbjct 1253 CCACCGAATCGCCCAGTTGGCCTTTTTCTGAATGCATGG 1291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613329635678640