Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20marinkellei_20[genbank_20GCA_5F000300495.1_202 012-10-01] 23,154 sequences; 34,226,154 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq11292 129 9e-25 >seq11292 Length=3062 Score = 129 bits (142), Expect = 9e-25 Identities = 498/768 (65%), Gaps = 22/768 (3%) Strand=Plus/Plus Query 159644 ACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAAT 159703 || ||||| || || ||||| ||||| |||| || || || |||||| || ||||| Sbjct 795 ACCTTCTTTTCAAAGAAGTTTGTCTTTCCCTGCAATGAGATCATTTCCATAAAGTCGAAT 854 Query 159704 GGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACA 159763 |||||||| || ||| | | | || || ||| || || | |||||||||| Sbjct 855 GGGTTCTTTGAGTTGTAGTGACGCTCATTGCCAAGTGCCAACAACAGTCGGTCTGCCACA 914 Query 159764 AATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCT 159823 || |||||||| | ||||| | || ||| |||||||||| || || |||| || Sbjct 915 AACTCGATGTACGTTGACATCAGGTCCGCGTTCATCCCCAGCAACCGCACAGGGATGGCG 974 Query 159824 TCCGACAGA--AACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCT-GCGAGACACGT 159880 || ||||| ||||| |||||| || ||||| | | ||| | |||| | ||| Sbjct 975 TC--ACAGATGAACTCACGCTCAATATCCACCGCACTGCAAATAATATCGCGA-ATACGC 1031 Query 159881 TCGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGC 159940 || | ||||| || ||||| || | ||| |||||||||||||| |||| Sbjct 1032 TCCTTTGGTAGCTTGTTCACAATGTAGTTTTCGTACAACAGGCACGCAAAGTCCGTGTGC 1091 Query 159941 AGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGA---TGAGGCCCGGCATGATCCCA 159997 | || ||||| || || |||| || || || ||| | || || ||||| | || Sbjct 1092 AAGCCTTCGTCACGCGAAATGAGTTCATT--AC-TGAAAGTCAGCCCGGGCATCAGGCCC 1148 Query 159998 CGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCA-CCGCTAAAAAAGATCCCCTCCACGGC 160056 || || |||||||| | | |||| ||| | ||| ||| || || || ||||| || Sbjct 1149 CGTTTCTTCAGCCAAAACA-GCGCGCAGAAGGAGCCGGAAAAGAAAATACCTTCCACCGC 1207 Query 160057 CGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGC 160116 |||||| || || || | || |||| || | || || || |||||| | || Sbjct 1208 CGCAAAGGCAACAAGACGTTCGGCAAACGAACTGCTGCTG---CGGATCCACCGAATCGC 1264 Query 160117 CCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTG 160176 ||| | ||||| || ||||| || || | ||||| | || | ||||| Sbjct 1265 CCAGTTGGCCTTTTTCTGAATGCATGGAATTGTTGAAATGGCGTGCAGCATACGGTCCTT 1324 Query 160177 CTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATT 160236 |||| || |||| | || | | | |||| |||||| |||| | || || || Sbjct 1325 CTCCGTCGGATCCGTAATGTACATGTCCAACAGCACCGAGTATGTTTCCGAATGTACGTT 1384 Query 160237 TTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATAC-TGCACCTCCTGTG 160295 || ||||| ||||| || |||||| | | ||||| | ||| || || ||| Sbjct 1385 CTCAATGGCAATCTGGAACCCGTAGAAGCAACGCACCTCC-GGTACTTGTACTTCCGTCA 1443 Query 160296 TGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACA 160355 |||||| || |||| || | || | || || || |||||||| |||| || Sbjct 1444 TGAACCGCTGCGCCAGGTTCTCCAGCACAATTCCATCACTTGCAGCAAAGAACGCCAGCA 1503 Query 160356 CGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGT 160403 |||| ||| ||| ||||| | | | | | |||||||||||| Sbjct 1504 CGTGCTTGATAAAAAACCTCTCCCCCTCGCTCA---TCTTTTCCCAGT 1548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794925062206240