Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20marinkellei_20[genbank_20GCA_5F000300495.1_202 012-10-01] 23,154 sequences; 34,226,154 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq11292 235 5e-57 seq11307 143 3e-29 seq11306 131 2e-25 seq14056 127 2e-24 >seq11292 Length=3062 Score = 235 bits (260), Expect = 5e-57 Identities = 619/928 (67%), Gaps = 20/928 (2%) Strand=Plus/Plus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||||||||| ||||||||||| || ||||| || ||||| || || || ||||||| Sbjct 767 CATCACGCCTGCCTTTTGATATTCACCGACCTTCTTTTCAAAGAAGTTTGTCTTTCCCTG 826 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTG---CTTGGTGCC 132707 ||| || || | |||||| || || ||||| || ||||||||| || |||| Sbjct 827 CAATGAGATCATTTCCATAAAGTCGAATGGGTTCTTTGAGTTGTAGTGACGCTCATTGCC 886 Query 132708 GATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGC 132766 | | | || | ||| | ||| ||||| ||||||||||| ||||| | | ||| Sbjct 887 AAGT--GCCAACAA-CAGTCGGTCTGCCACAAACTCGATGTACGTTGACATCAGGTCCGC 943 Query 132767 AATTAAGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGA 132826 || | ||||||| ||||| || | || || || || |||| || | | Sbjct 944 G-TTCATCCCCAGCAACCGCACAGGGATGGCGTCACAGATGAACTCACGCTCAATATCCA 1002 Query 132827 CCGCGTCGGTGACGATTTCCCTAACGCGCGCCGC-GCTCGGCCGTTGCACCAAATGCTT- 132884 |||| | | || || | || ||| || | | | ||| ||| | | || Sbjct 1003 CCGCACTGCAAATAATATCGCGAATACGCTCCTTTGGTAGCTTGTT-CACAATGTAGTTT 1061 Query 132885 --GAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTG 132942 | ||| || ||| |||||||| |||||||| ||||| | ||||||||||| || Sbjct 1062 TCGTACAACAGGCACGCAAAGTCCGTGTGCAAGCCTTCGTCACGCGAAATGAGTTCATTA 1121 Query 132943 CTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTG 133002 |||||||||| |||||||| ||||| ||||| || |||||||| | ||| ||| | Sbjct 1122 CTGAAAGTCAGCCCGGGCATCAGGCCCCGTTTCTTCAGCCAAAACAGCGCGCAGAAGGAG 1181 Query 133003 CCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCT 133062 || |||||||| | || || || ||||| || || || || || ||| | |||| || Sbjct 1182 CCGGAAAAGAAAATACCTTCCACCGCCGCAAAGGCAACAAGACGTTCGGCAAACG-AACT 1240 Query 133063 TCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTT 133122 | ||||| |||||| || | |||||| | |||||||| | | ||| || || ||| Sbjct 1241 GC--TGCTGCGGATCCACCGAATCGCCCAGTTGGCCTTTTTCTGAATGCATGGAATTGTT 1298 Query 133123 TCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACG-CACGTAGGTGTCGATGAG 133181 ||||||| || || |||| ||||| || | || | ||| |||| | || Sbjct 1299 GAAATGGCGTGCAGCATACGGTCCTTCTCCGTCG-GATCCGTAATGTACATGTCCAACAG 1357 Query 133182 GGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCG 133241 ||| || ||||||| ||||||||||| ||||| || || || ||||| ||||| || Sbjct 1358 CACCGAGTATGTTTCCGAATGTACGTTCTCAATGGCAATCTGGAACCCGTAGAAGCAACG 1417 Query 133242 CGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCC 133301 | |||| || || ||||| ||| |||| |||| || || || || || Sbjct 1418 CACCTCCGGTACTTGTACTTCCGTCATGAACCGCTGCGCCAGGTTCTCCAGCACAATTCC 1477 Query 133302 GTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAA 133361 || || || || || || ||||||||||||||||| ||| | ||| ||| ||| Sbjct 1478 ATCACTTGCAGCAAAGAACGCCAGCACGTGCTTGATAAAAAACCTCTCCCCCTCGCTCAT 1537 Query 133362 GCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGC 133421 |||||||| | ||| || || ||| | ||||| || |||| | | | || Sbjct 1538 CTTTTCCCAGTCCGCCAAGTCACTGCTCAAGTCGATTTCCTCCACCGTCC-AGATGCTGC 1596 Query 133422 -CTCGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACC 133480 ||||| | |||||| | |||| || || |||| || ||||| ||||| | | Sbjct 1597 TTTCGGCCTCCTTGTACTTCTTCCAGATATCGTGGTATTTAATCGGAAAGATCACGTAAC 1656 Query 133481 GGCGGGGGTTTTCGCGCAACAGCGGCTC 133508 || || || ||||||| ||||| || Sbjct 1657 GGTCAGGATTCTCGCGCAGAAGCGGTTC 1684 >seq11307 Length=654 Score = 143 bits (158), Expect = 3e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || |||||||| || ||| | |||| || ||| ||| | Sbjct 617 ATGCAGATCTTCGTGAAGACACTGACGGGCAAGACGATCGCGCTCGAGGTGGAGTCCAGC 558 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| ||||| | ||||| Sbjct 557 GACACCATTGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCA 499 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| |||||||| |||| ||||| ||| |||||||| Sbjct 498 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGTCGCACGCTCGCAGACTACAA 439 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | |||||||| | |||||||| || | ||||| Sbjct 438 CATCCAGAAGGAGTCCACGCTGCACCTTGTGCTGCGCCTGCGTGGCGG 391 >seq11306 Length=946 Score = 131 bits (144), Expect = 2e-25 Identities = 160/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || || |||||||| || ||| | |||| || ||| | | | Sbjct 728 ATGCAAATTTTTGTGAAGACACTGACGGGCAAGACGATCGCGCTCGAGGTGGAGTCTAGC 669 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || | || |||| ||||| ||||| ||||| | ||||| Sbjct 668 GATACCATTGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCA 610 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| |||||||| |||| ||||| ||| |||||||| Sbjct 609 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGACGGTCGCACGCTCGCAGACTACAA 550 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| ||||| | |||||||| | |||||||| Sbjct 549 CATCCAGAAGGAGTCCACGCTGCACCTTGTGCTGCG 514 >seq14056 Length=822 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || |||||||| || || | |||| || ||| ||| | Sbjct 463 ATGCAGATCTTCGTGAAGACACTGACGGGCAAGACGATTGCACTCGAGGTGGAGTCCAGC 522 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || | || |||| ||||| ||||| ||||| | ||||| Sbjct 523 GATACCATTGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCA 581 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| |||||||| || | ||||| ||| |||||||| Sbjct 582 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACGCTCGCAGACTACAA 641 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | |||||||| | |||||||| || | || ||| Sbjct 642 CATCCAGAAGGAGTCCACGCTGCACCTTGTGCTGCGCCTGCGCGGTGGC 690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500028037487360