Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trypanosoma_20cruzi_20marinkellei_20[genbank_20GCA_5F000300495.1_202 012-10-01] 23,154 sequences; 34,226,154 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq5537 147 3e-30 seq11292 91.5 2e-13 >seq5537 Length=6528 Score = 147 bits (162), Expect = 3e-30 Identities = 658/1025 (64%), Gaps = 37/1025 (4%) Strand=Plus/Plus Query 112323 ATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAG 112382 ||||||||||| || || ||||||| || ||||| |||||| | || || |||||| Sbjct 4848 ATGCTTTACAAGGATGCATGTAACCGTAAATCAAATCAGAAGAATATTGGAGTCATCAAG 4907 Query 112383 AGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGT 112442 | || ||||| || || || || | || | |||| || |||||| || ||||| Sbjct 4908 TGCTCGAACCTTTGCACGGAGATTATAGAGTATACATCAAAGGATGAGGTTGCGGTGTGC 4967 Query 112443 AACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTAT 112502 |||||||| || || || || || | ||||||| |||| || | | |||| | Sbjct 4968 AACCTCGCCTCCATTGCACTTCCACGCTTTGTGGATAAGGAGAAAAGAATGTATGATCAC 5027 Query 112503 GAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGA 112562 | || | || || ||||| | |||||||||||| || || |||| |||||| | Sbjct 5028 CAGCGGCTGTATGAGGTCACGAAGATTGTCACAAAAAATCTTAATCGAGTGATTGATCGT 5087 Query 112563 AATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGT 112619 || ||| || || ||| | || || | || | | ||||| ||||| Sbjct 5088 AACCATTATCCTGTACCCGAGTCACGCCG--AAGC-AACGAGCTTAATCGTCCCATTGGA 5144 Query 112620 CTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCT-TTGTCGCCACGCATTTGATTCCGA 112678 | || || ||||| | ||||| || || || || || || ||||| | | | Sbjct 5145 ATTGGCGTACAAGGAATGGCGGACACGTTTATCCTGATGCGGCTAC-CATTTACATGCCA 5203 Query 112679 CGAAGCGAAGGA-AATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGG 112737 || || ||| | | |||| ||| ||||| || || || ||| || | |||| Sbjct 5204 GGAGGC-AAGAACTTTGAATGAAGATATTTTTGAAACGATTTACTACGGTGCCGTGGAGG 5262 Query 112738 CGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTT 112797 | || ||| | || || || || || || |||| |||| || ||| || | Sbjct 5263 CAAGCGTGGAACTCGCGGAAGTGGAAGGGCCTTATGCGCGGTTTGCAGGCAGTCCCGCAT 5322 Query 112798 CACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAG----CTTCACTACGAC 112853 | ||||| || ||||||||| |||||| || || |||| | | | || Sbjct 5323 CGCAAGGCCAACTACAATTTGATCTGTGGG-AGCAGAAACCACGAAGTGGCCGTTGGGAT 5381 Query 112854 TGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTT--TGATGG 112911 |||||||| | ||| ||| ||| | | | ||| | || | | || || | ||| Sbjct 5382 TGGGACGCATTGAAGAGACGTGTCATGAAAAGTGGTATGCGGA--ATTCGTTACTATTGG 5439 Query 112912 CACCAATGCCAACAGCCTCCACCGCACAAAT-CTTGGGTAATAATGAATGCTTTGAACCC 112970 | |||||||| || || ||||| | || || |||||| || ||||| ||||||||||| Sbjct 5440 CTCCAATGCCCACTGCATCCACTTCGCAGATACTTGGG-AACAATGAGTGCTTTGAACCA 5498 Query 112971 TACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAG 113030 | || | || ||||| || | || || || |||||| | || |||||| Sbjct 5499 TTTACCTCAAATATCTACGTGCGCCGAGTGCTGAGTGGTGAGTTTCCTGTGGTTAACAAG 5558 Query 113031 CATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATG---AAGGATCTC 113087 | || ||| || || | || ||||| ||| | | || ||| || | | Sbjct 5559 TACCTTGTGATGGATCTTATTAAGCGGGGTCTGTGGAACGAAGAGATGCGCAACCAGATT 5618 Query 113088 ATGG--TGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAGA 113145 || | | || ||| || | ||||| ||| || |||||| |||| | ||| Sbjct 5619 ATTGCCTACAA-----TGGCTCGGTACAAAACATTAAGGGCATTCCAAATGACCTCAAGG 5673 Query 113146 AGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATC 113205 ||||||| || || |||||||| | ||||||| | ||||| ||||| | || | Sbjct 5674 AGTTGTATCGTGTTGTGTGGGAAATTCGGCAGAAGGATCTTATTGAGATGGCTGTGGACC 5733 Query 113206 GTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGTCCAACGATGT 113265 |||| |||||||| || |||||||| ||||||| || |||||| |||||| | Sbjct 5734 GTGGCAAGTTCATTGACCAGAGTCAAAGCTTGAATCTGTTTTTGGAAAATCCAAC---TT 5790 Query 113266 CCA---AGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGT 113322 ||| |||| | ||||||||| | | ||| | || ||||| ||||| |||| Sbjct 5791 CCAGCCAGCTGACATCTATGCACTTTTTTGCCTGGGAACGTGGCCTCAAGACGGGCATGT 5850 Query 113323 ATTAC 113327 ||||| Sbjct 5851 ATTAC 5855 >seq11292 Length=3062 Score = 91.5 bits (100), Expect = 2e-13 Identities = 162/235 (69%), Gaps = 5/235 (2%) Strand=Plus/Minus Query 102099 GCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT 102158 ||||| |||| ||||||| ||||| || || || | ||||| || |||| || Sbjct 1306 GCCATTTCAACAATTCCATGCATTCAGAAAAAGGCCAACTGGGCGATTCGGTGG----AT 1251 Query 102159 ACAAAGTCGC-GTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTT 102217 | || || |||| ||||| || || || | || |||||| || || ||||| || Sbjct 1250 CCGCAGCAGCAGTTCGTTTGCCGAACGTCTTGTTGCCTTTGCGGCGGTGGAAGGTATTTT 1191 Query 102218 CTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCT 102277 ||| || || ||||||||||| | | |||||| ||||| || || || ||||| || || Sbjct 1190 CTTTTCCGGCTCCTTCTGCGCGCTGTTTTGGCTGAAGAAACGGGGCCTGATGCCCGGGCT 1131 Query 102278 CTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCG 102332 ||| || || || || || |||||||| || | ||| || |||||| Sbjct 1130 GACTTTCAGTAATGAACTCATTTCGCGTGACGAAGGCTTGCACACGGACTTTGCG 1076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620562741630880